Data from: Bayesian inference of a historical bottleneck in a heavily exploited marine mammal

• Main Authors: Hoffman, Joe I, Grant, Suzie M, Forcada, Jaume, Phillips, Caleb D
• Format: Dataset
• Language: unknown
• Published: Data Archiving and Networked Services (DANS) 2020
• Subjects: Life sciences; medicine and health care; Conservation Biology; Conservation Genetics; Mammals; Population Dynamics; Population Genetics - Empirical; Wildlife Management; South Georgia; Antarctica; Contemporary; Arctocephalus gazella; geo; stat; Antarctic; The Antarctic; Antarc*; Antarctic Fur Seal
• Online Access: https://doi.org/10.5061/dryad.0kj5n

Emerging Bayesian analytical approaches offer increasingly sophisticated means of reconstructing historical population dynamics from genetic data, but have been little applied to scenarios involving demographic bottlenecks. Consequently, we analysed a large mitochondrial and microsatellite dataset from the Antarctic fur seal Arctocephalus gazella, a species subjected to one of the most extreme examples of uncontrolled exploitation in history when it was reduced to the brink of extinction by the sealing industry during the late eighteenth and nineteenth centuries. Classical bottleneck tests, which exploit the fact that rare alleles are rapidly lost during demographic reduction, yielded ambiguous results. In contrast, a strong signal of recent demographic decline was detected using both Bayesian skyline plots and approximate Bayesian computing, the latter also allowing derivation of posterior parameter estimates that were remarkably consistent with historical observations. This was achieved using only contemporary samples, further emphasizing the potential of Bayesian approaches to address important outstanding problems in conservation and evolutionary biology. Hoffman microsatellite dataMicrosatellite dataset (246 individuals genotyped at 21 loci, with sample identities and locations)Hoffman sequence dataSequence datafile, sorted by haplotype, with the same individual identifiers as in the microsatellite datafile.