Data from: Development, validation, and evaluation of an assay for the detection of wood frogs (Rana sylvatica) in environmental DNA
We developed and describe a qPCR assay for the detection of wood frogs (Rana sylvatica) using environmental DNA (eDNA) sampling. A single primer set was designed to amplify a 115-bp region of the wood frog cytochrome B gene and assessed for target specificity. There was no evidence of amplification...
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fttriple:oai:gotriple.eu:50|dedup_wf_001::8b9effbcad83aa0cc636e51580c0b5c6 2023-05-15T17:39:54+02:00 Data from: Development, validation, and evaluation of an assay for the detection of wood frogs (Rana sylvatica) in environmental DNA Spangler, Mark A. Huettmann, Falk Herriott, Ian C. López, J. Andrés 2017-01-01 https://doi.org/10.5061/dryad.b7g24 undefined unknown http://dx.doi.org/10.5061/dryad.b7g24 https://dx.doi.org/10.5061/dryad.b7g24 lic_creative-commons oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:95866 oai:easy.dans.knaw.nl:easy-dataset:95866 10.5061/dryad.b7g24 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 re3data_____::r3d100000044 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f Life sciences medicine and health care Rana sylvatica wood frog eDNA cytochrome b Alaska Fairbanks North Star Borough envir geo Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2017 fttriple https://doi.org/10.5061/dryad.b7g24 2023-01-22T16:51:35Z We developed and describe a qPCR assay for the detection of wood frogs (Rana sylvatica) using environmental DNA (eDNA) sampling. A single primer set was designed to amplify a 115-bp region of the wood frog cytochrome B gene and assessed for target specificity. There was no evidence of amplification in 11 non-target species. We evaluated the utility of the primer set in qPCR assay by conducting geo-referenced eDNA field surveys in Interior Alaska. Results indicate that the assay consistently detects wood frog DNA in the environment to 1.83 × 10−3 pg/μL. The assay provides a complement to traditional survey methods and can be readily applied in a wider conservation and management context. Wood Frog eDNA Survey Results1 liter water samples collected around Fairbanks/North Pole for eDNA analysis. Filters were cut in half and DNA isolated via phenol-chloroform from one half. Other half is archived. qPCR (SYBR Green) conducted for detection of wood frog cytB (Rasy_00).Spangler_eDNA2015.csv Dataset North Pole Alaska Unknown Fairbanks North Pole North Star ENVELOPE(-117.636,-117.636,56.850,56.850) |
institution |
Open Polar |
collection |
Unknown |
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unknown |
topic |
Life sciences medicine and health care Rana sylvatica wood frog eDNA cytochrome b Alaska Fairbanks North Star Borough envir geo |
spellingShingle |
Life sciences medicine and health care Rana sylvatica wood frog eDNA cytochrome b Alaska Fairbanks North Star Borough envir geo Spangler, Mark A. Huettmann, Falk Herriott, Ian C. López, J. Andrés Data from: Development, validation, and evaluation of an assay for the detection of wood frogs (Rana sylvatica) in environmental DNA |
topic_facet |
Life sciences medicine and health care Rana sylvatica wood frog eDNA cytochrome b Alaska Fairbanks North Star Borough envir geo |
description |
We developed and describe a qPCR assay for the detection of wood frogs (Rana sylvatica) using environmental DNA (eDNA) sampling. A single primer set was designed to amplify a 115-bp region of the wood frog cytochrome B gene and assessed for target specificity. There was no evidence of amplification in 11 non-target species. We evaluated the utility of the primer set in qPCR assay by conducting geo-referenced eDNA field surveys in Interior Alaska. Results indicate that the assay consistently detects wood frog DNA in the environment to 1.83 × 10−3 pg/μL. The assay provides a complement to traditional survey methods and can be readily applied in a wider conservation and management context. Wood Frog eDNA Survey Results1 liter water samples collected around Fairbanks/North Pole for eDNA analysis. Filters were cut in half and DNA isolated via phenol-chloroform from one half. Other half is archived. qPCR (SYBR Green) conducted for detection of wood frog cytB (Rasy_00).Spangler_eDNA2015.csv |
format |
Dataset |
author |
Spangler, Mark A. Huettmann, Falk Herriott, Ian C. López, J. Andrés |
author_facet |
Spangler, Mark A. Huettmann, Falk Herriott, Ian C. López, J. Andrés |
author_sort |
Spangler, Mark A. |
title |
Data from: Development, validation, and evaluation of an assay for the detection of wood frogs (Rana sylvatica) in environmental DNA |
title_short |
Data from: Development, validation, and evaluation of an assay for the detection of wood frogs (Rana sylvatica) in environmental DNA |
title_full |
Data from: Development, validation, and evaluation of an assay for the detection of wood frogs (Rana sylvatica) in environmental DNA |
title_fullStr |
Data from: Development, validation, and evaluation of an assay for the detection of wood frogs (Rana sylvatica) in environmental DNA |
title_full_unstemmed |
Data from: Development, validation, and evaluation of an assay for the detection of wood frogs (Rana sylvatica) in environmental DNA |
title_sort |
data from: development, validation, and evaluation of an assay for the detection of wood frogs (rana sylvatica) in environmental dna |
publishDate |
2017 |
url |
https://doi.org/10.5061/dryad.b7g24 |
long_lat |
ENVELOPE(-117.636,-117.636,56.850,56.850) |
geographic |
Fairbanks North Pole North Star |
geographic_facet |
Fairbanks North Pole North Star |
genre |
North Pole Alaska |
genre_facet |
North Pole Alaska |
op_source |
oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:95866 oai:easy.dans.knaw.nl:easy-dataset:95866 10.5061/dryad.b7g24 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 re3data_____::r3d100000044 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f |
op_relation |
http://dx.doi.org/10.5061/dryad.b7g24 https://dx.doi.org/10.5061/dryad.b7g24 |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5061/dryad.b7g24 |
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1766140662864936960 |