Data from: The evolutionary history of dogs in the Americas
Dryad version number: 1 Version status: submitted Dryad curation status: Published Sharing link: https://datadryad.org/stash/share/zrwzgCscLZcxNYNjilPA1tHuWTfUMkUZXmMpSDzv83k Storage size: 121385898 Visibility: public Usage notes Mitochondrial DNA FASTA file FASTA file containing 1166 dog mtDNA geno...
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Data Archiving and Networked Services (DANS)
2021
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Online Access: | https://doi.org/10.5061/dryad.s1k47j4 https://doi.org/10.14288/1.0397683 https://doi.org/10.5683/SP2/FFOWXI |
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fttriple:oai:gotriple.eu:50|dedup_wf_001::7f7e564c627fd36ac7905c1e404d3b1a |
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record_format |
openpolar |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
fttriple |
language |
unknown |
topic |
Life sciences medicine and health care Other Canis lupus Canis lupus familiaris (:tba) lang hist |
spellingShingle |
Life sciences medicine and health care Other Canis lupus Canis lupus familiaris (:tba) lang hist Leathlobhair, Máire Ní Perri, Angela R. Irving-Pease, Evan K. Witt, Kelsey E. Linderholm, Anna Haile, James Lebrasseur, Ophelie Ameen, Carly Blick, Jeffrey Boyko, Adam R. Brace, Selina Nunes Cortes, Yahaira Crockford, Susan J. Devault, Alison Dimopoulos, Evangelos A. Eldridge, Morley Enk, Jacob Gopalakrishnan, Shyam Gori, Kevin Grimes, Vaughan Guiry, Eric Hansen, Anders J. Hulme-Beaman, Ardern Johnson, John Kitchen, Andrew Kasparov, Aleksei K. Kwon, Young-Mi Nikolskiy, Pavel A. Peraza Lope, Carlos Manin, Aurélie Martin, Terrance Meyer, Michael Noack Myers, Kelsey Omura, Mark Rouillard, Jean-Marie Pavlova, Elena Y. Sciulli, Paul Mikkel-Holger, Sinding S. Strakova, Andrea Ivanova, Varvara V. Widga, Christopher Willerslev, Eske Pitulko, Vladimir V. Barnes, Ian Gilbert, M. Thomas P. Dobney, Keith M. Malhi, Ripan S. Murchison, Elizabeth P. Larson, Greger Frantz, Laurent A. F. Data from: The evolutionary history of dogs in the Americas |
topic_facet |
Life sciences medicine and health care Other Canis lupus Canis lupus familiaris (:tba) lang hist |
description |
Dryad version number: 1 Version status: submitted Dryad curation status: Published Sharing link: https://datadryad.org/stash/share/zrwzgCscLZcxNYNjilPA1tHuWTfUMkUZXmMpSDzv83k Storage size: 121385898 Visibility: public Usage notes Mitochondrial DNA FASTA file FASTA file containing 1166 dog mtDNA genomes used in this study full_mtDNA_alignment.fasta NEXUS tree Maximum likelihood tree (RAxML) of 1166 dogs mtDNA genomes used in this study full_mtDNA_alignment.tre Excel sheet Publication source of the 1166 mtDNA genomes used in this study full_mtDNA_alignment.xlsx Plink (bed) file Contains genotype for dogs 54 dogs full_data.bed Plink file (bim) Contains genotype for 54 dogs full_data.bim Plink file (fam) Contains genotype for 54 dogs full_data.fam NJ tree in Figure 2b NJ tree in Figure 2b (see Table S2 for more info) Figure_b.tre Nexus file Nexus file used for producing Figure S12 (MKV model in MrBayes) Binary_char_MKV.nex NEXUS tree Bayesian tree in Figure S12 (see Table S2 for more info) Figure_S12.tre Abstract Dogs were present in the Americas prior to the arrival of European colonists, but the origin and fate of these pre-contact dogs are largely unknown. We sequenced 71 mitochondrial and seven nuclear genomes from ancient North American and Siberian dogs spanning ~9,000 years. Our analysis indicates that American dogs were not domesticated from North American wolves. Instead, American dogs form a monophyletic lineage that likely originated in Siberia and dispersed into the Americas alongside people. After the arrival of Europeans, native American dogs almost completely disappeared, leaving a minimal genetic legacy in modern dog populations. Remarkably, the closest detectable extant lineage to pre-contact American dogs is the canine transmissible venereal tumor, a contagious cancer clone derived from an individual dog that lived up to 8,000 years ago. |
author2 |
Federated Research Data Repository Dépôt fédéré de données de recherche |
format |
Dataset |
author |
Leathlobhair, Máire Ní Perri, Angela R. Irving-Pease, Evan K. Witt, Kelsey E. Linderholm, Anna Haile, James Lebrasseur, Ophelie Ameen, Carly Blick, Jeffrey Boyko, Adam R. Brace, Selina Nunes Cortes, Yahaira Crockford, Susan J. Devault, Alison Dimopoulos, Evangelos A. Eldridge, Morley Enk, Jacob Gopalakrishnan, Shyam Gori, Kevin Grimes, Vaughan Guiry, Eric Hansen, Anders J. Hulme-Beaman, Ardern Johnson, John Kitchen, Andrew Kasparov, Aleksei K. Kwon, Young-Mi Nikolskiy, Pavel A. Peraza Lope, Carlos Manin, Aurélie Martin, Terrance Meyer, Michael Noack Myers, Kelsey Omura, Mark Rouillard, Jean-Marie Pavlova, Elena Y. Sciulli, Paul Mikkel-Holger, Sinding S. Strakova, Andrea Ivanova, Varvara V. Widga, Christopher Willerslev, Eske Pitulko, Vladimir V. Barnes, Ian Gilbert, M. Thomas P. Dobney, Keith M. Malhi, Ripan S. Murchison, Elizabeth P. Larson, Greger Frantz, Laurent A. F. |
author_facet |
Leathlobhair, Máire Ní Perri, Angela R. Irving-Pease, Evan K. Witt, Kelsey E. Linderholm, Anna Haile, James Lebrasseur, Ophelie Ameen, Carly Blick, Jeffrey Boyko, Adam R. Brace, Selina Nunes Cortes, Yahaira Crockford, Susan J. Devault, Alison Dimopoulos, Evangelos A. Eldridge, Morley Enk, Jacob Gopalakrishnan, Shyam Gori, Kevin Grimes, Vaughan Guiry, Eric Hansen, Anders J. Hulme-Beaman, Ardern Johnson, John Kitchen, Andrew Kasparov, Aleksei K. Kwon, Young-Mi Nikolskiy, Pavel A. Peraza Lope, Carlos Manin, Aurélie Martin, Terrance Meyer, Michael Noack Myers, Kelsey Omura, Mark Rouillard, Jean-Marie Pavlova, Elena Y. Sciulli, Paul Mikkel-Holger, Sinding S. Strakova, Andrea Ivanova, Varvara V. Widga, Christopher Willerslev, Eske Pitulko, Vladimir V. Barnes, Ian Gilbert, M. Thomas P. Dobney, Keith M. Malhi, Ripan S. Murchison, Elizabeth P. Larson, Greger Frantz, Laurent A. F. |
author_sort |
Leathlobhair, Máire Ní |
title |
Data from: The evolutionary history of dogs in the Americas |
title_short |
Data from: The evolutionary history of dogs in the Americas |
title_full |
Data from: The evolutionary history of dogs in the Americas |
title_fullStr |
Data from: The evolutionary history of dogs in the Americas |
title_full_unstemmed |
Data from: The evolutionary history of dogs in the Americas |
title_sort |
data from: the evolutionary history of dogs in the americas |
publisher |
Data Archiving and Networked Services (DANS) |
publishDate |
2021 |
url |
https://doi.org/10.5061/dryad.s1k47j4 https://doi.org/10.14288/1.0397683 https://doi.org/10.5683/SP2/FFOWXI |
genre |
Canis lupus Siberia |
genre_facet |
Canis lupus Siberia |
op_source |
oai:easy.dans.knaw.nl:easy-dataset:109254 10.14288/1.0397683 oai:dataverse.scholarsportal.info-dataverse-ubc:153740_150149 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:109254 10.5683/sp2/ffowxi 10.5061/dryad.s1k47j4 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|openaire____::55045bd2a65019fd8e6741a755395c8c 10|openaire____::e783372970a1dc066ce99c673090ff88 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f |
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http://dx.doi.org/10.5061/dryad.s1k47j4 https://dx.doi.org/10.14288/1.0397683 http://dx.doi.org/10.5683/SP2/FFOWXI https://dx.doi.org/10.5683/sp2/ffowxi https://dx.doi.org/10.5061/dryad.s1k47j4 |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5061/dryad.s1k47j4 https://doi.org/10.14288/1.0397683 https://doi.org/10.5683/SP2/FFOWXI https://doi.org/10.5683/sp2/ffowxi |
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1766384982509486080 |
spelling |
fttriple:oai:gotriple.eu:50|dedup_wf_001::7f7e564c627fd36ac7905c1e404d3b1a 2023-05-15T15:49:58+02:00 Data from: The evolutionary history of dogs in the Americas Leathlobhair, Máire Ní Perri, Angela R. Irving-Pease, Evan K. Witt, Kelsey E. Linderholm, Anna Haile, James Lebrasseur, Ophelie Ameen, Carly Blick, Jeffrey Boyko, Adam R. Brace, Selina Nunes Cortes, Yahaira Crockford, Susan J. Devault, Alison Dimopoulos, Evangelos A. Eldridge, Morley Enk, Jacob Gopalakrishnan, Shyam Gori, Kevin Grimes, Vaughan Guiry, Eric Hansen, Anders J. Hulme-Beaman, Ardern Johnson, John Kitchen, Andrew Kasparov, Aleksei K. Kwon, Young-Mi Nikolskiy, Pavel A. Peraza Lope, Carlos Manin, Aurélie Martin, Terrance Meyer, Michael Noack Myers, Kelsey Omura, Mark Rouillard, Jean-Marie Pavlova, Elena Y. Sciulli, Paul Mikkel-Holger, Sinding S. Strakova, Andrea Ivanova, Varvara V. Widga, Christopher Willerslev, Eske Pitulko, Vladimir V. Barnes, Ian Gilbert, M. Thomas P. Dobney, Keith M. Malhi, Ripan S. Murchison, Elizabeth P. Larson, Greger Frantz, Laurent A. F. Federated Research Data Repository Dépôt fédéré de données de recherche 2021-05-20 https://doi.org/10.5061/dryad.s1k47j4 https://doi.org/10.14288/1.0397683 https://doi.org/10.5683/SP2/FFOWXI undefined unknown Data Archiving and Networked Services (DANS) http://dx.doi.org/10.5061/dryad.s1k47j4 https://dx.doi.org/10.14288/1.0397683 http://dx.doi.org/10.5683/SP2/FFOWXI https://dx.doi.org/10.5683/sp2/ffowxi https://dx.doi.org/10.5061/dryad.s1k47j4 lic_creative-commons oai:easy.dans.knaw.nl:easy-dataset:109254 10.14288/1.0397683 oai:dataverse.scholarsportal.info-dataverse-ubc:153740_150149 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:109254 10.5683/sp2/ffowxi 10.5061/dryad.s1k47j4 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|openaire____::55045bd2a65019fd8e6741a755395c8c 10|openaire____::e783372970a1dc066ce99c673090ff88 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f Life sciences medicine and health care Other Canis lupus Canis lupus familiaris (:tba) lang hist Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2021 fttriple https://doi.org/10.5061/dryad.s1k47j4 https://doi.org/10.14288/1.0397683 https://doi.org/10.5683/SP2/FFOWXI https://doi.org/10.5683/sp2/ffowxi 2023-01-22T16:51:26Z Dryad version number: 1 Version status: submitted Dryad curation status: Published Sharing link: https://datadryad.org/stash/share/zrwzgCscLZcxNYNjilPA1tHuWTfUMkUZXmMpSDzv83k Storage size: 121385898 Visibility: public Usage notes Mitochondrial DNA FASTA file FASTA file containing 1166 dog mtDNA genomes used in this study full_mtDNA_alignment.fasta NEXUS tree Maximum likelihood tree (RAxML) of 1166 dogs mtDNA genomes used in this study full_mtDNA_alignment.tre Excel sheet Publication source of the 1166 mtDNA genomes used in this study full_mtDNA_alignment.xlsx Plink (bed) file Contains genotype for dogs 54 dogs full_data.bed Plink file (bim) Contains genotype for 54 dogs full_data.bim Plink file (fam) Contains genotype for 54 dogs full_data.fam NJ tree in Figure 2b NJ tree in Figure 2b (see Table S2 for more info) Figure_b.tre Nexus file Nexus file used for producing Figure S12 (MKV model in MrBayes) Binary_char_MKV.nex NEXUS tree Bayesian tree in Figure S12 (see Table S2 for more info) Figure_S12.tre Abstract Dogs were present in the Americas prior to the arrival of European colonists, but the origin and fate of these pre-contact dogs are largely unknown. We sequenced 71 mitochondrial and seven nuclear genomes from ancient North American and Siberian dogs spanning ~9,000 years. Our analysis indicates that American dogs were not domesticated from North American wolves. Instead, American dogs form a monophyletic lineage that likely originated in Siberia and dispersed into the Americas alongside people. After the arrival of Europeans, native American dogs almost completely disappeared, leaving a minimal genetic legacy in modern dog populations. Remarkably, the closest detectable extant lineage to pre-contact American dogs is the canine transmissible venereal tumor, a contagious cancer clone derived from an individual dog that lived up to 8,000 years ago. Dataset Canis lupus Siberia Unknown |