Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard.
The data presents foraminiferal diversity and spatial variability inferred from SSU rDNA sequences. Surface sediment samples were collected at 15 sampling stations located in the Svalbard archipelago. Sampling stations were located in the glaciated fjords (Isfjorden, Wijdefjorden, and Rijpfjorden) a...
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Mendeley
2020
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Online Access: | https://doi.org/10.17632/7kjkf8by5d.1 https://figshare.com/articles/Dataset_of_foraminiferal_sedimentary_DNA_sedDNA_sequences_from_Svalbard_/11938455 https://doi.org/10.17632/7kjkf8by5d |
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fttriple:oai:gotriple.eu:50|dedup_wf_001::7d1ca9b2acccf94bc12bed74dd011f24 2023-05-15T15:04:14+02:00 Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. Pawłowska, J Joanna Pawłowska 2020-03-03 https://doi.org/10.17632/7kjkf8by5d.1 https://figshare.com/articles/Dataset_of_foraminiferal_sedimentary_DNA_sedDNA_sequences_from_Svalbard_/11938455 https://doi.org/10.17632/7kjkf8by5d undefined unknown Mendeley http://dx.doi.org/10.17632/7kjkf8by5d.1 https://dx.doi.org/10.17632/7kjkf8by5d.1 https://figshare.com/articles/Dataset_of_foraminiferal_sedimentary_DNA_sedDNA_sequences_from_Svalbard_/11938455 http://dx.doi.org/10.17632/7kjkf8by5d https://dx.doi.org/10.17632/7kjkf8by5d lic_creative-commons 10.17632/7kjkf8by5d.1 doi:10.17632/7kjkf8by5d.1 oai:figshare.com:article/11938455 10.17632/7kjkf8by5d doi:10.17632/7kjkf8by5d oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:160256 oai:easy.dans.knaw.nl:easy-dataset:160256 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::db814dc656a911b556dba42a331cebe9 10|re3data_____::7980778c78fb4cf0fab13ce2159030dc 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 Earth Sciences Interdisciplinary sciences geo envir Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2020 fttriple https://doi.org/10.17632/7kjkf8by5d.1 https://doi.org/10.17632/7kjkf8by5d 2023-01-22T17:23:22Z The data presents foraminiferal diversity and spatial variability inferred from SSU rDNA sequences. Surface sediment samples were collected at 15 sampling stations located in the Svalbard archipelago. Sampling stations were located in the glaciated fjords (Isfjorden, Wijdefjorden, and Rijpfjorden) and in the vicinity of large tidewater glaciers (Nordaustlandet, Edgeoya). Foraminiferal sedimentary DNA (sedDNA) was analyzed in four sediment size fractions: > 500 µm, 500-100 µm, 100-63µm and < 63 µm. The total DNA was extracted from sediments, foraminifer-specific DNA fragments were amplified and sequenced using Illumina technology. Sequences are clustered into the Operational Taxonomic Units (OTUs), and for each OTU, a number of sequence reads are presented. This data provides the first insight into the genetic diversity of Arctic foraminifer in different sediment size fractions. The data is of interest to researchers in a field of metagenomic studies, including biomonitoring, biodiversity surveys, and environmental impact assessments. Moreover, it may be used as a reference in paleoenvironmental and paleoclimatic studies. Dataset Arctic Foraminifera* Isfjord* Isfjorden Nordaustlandet Rijpfjord* Svalbard Wijdefjord* Unknown Arctic Nordaustlandet ENVELOPE(22.400,22.400,79.800,79.800) Rijpfjorden ENVELOPE(22.188,22.188,80.165,80.165) Svalbard Svalbard Archipelago Wijdefjorden ENVELOPE(15.569,15.569,79.543,79.543) |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
fttriple |
language |
unknown |
topic |
Earth Sciences Interdisciplinary sciences geo envir |
spellingShingle |
Earth Sciences Interdisciplinary sciences geo envir Pawłowska, J Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
topic_facet |
Earth Sciences Interdisciplinary sciences geo envir |
description |
The data presents foraminiferal diversity and spatial variability inferred from SSU rDNA sequences. Surface sediment samples were collected at 15 sampling stations located in the Svalbard archipelago. Sampling stations were located in the glaciated fjords (Isfjorden, Wijdefjorden, and Rijpfjorden) and in the vicinity of large tidewater glaciers (Nordaustlandet, Edgeoya). Foraminiferal sedimentary DNA (sedDNA) was analyzed in four sediment size fractions: > 500 µm, 500-100 µm, 100-63µm and < 63 µm. The total DNA was extracted from sediments, foraminifer-specific DNA fragments were amplified and sequenced using Illumina technology. Sequences are clustered into the Operational Taxonomic Units (OTUs), and for each OTU, a number of sequence reads are presented. This data provides the first insight into the genetic diversity of Arctic foraminifer in different sediment size fractions. The data is of interest to researchers in a field of metagenomic studies, including biomonitoring, biodiversity surveys, and environmental impact assessments. Moreover, it may be used as a reference in paleoenvironmental and paleoclimatic studies. |
author2 |
Joanna Pawłowska |
format |
Dataset |
author |
Pawłowska, J |
author_facet |
Pawłowska, J |
author_sort |
Pawłowska, J |
title |
Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
title_short |
Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
title_full |
Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
title_fullStr |
Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
title_full_unstemmed |
Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard. |
title_sort |
dataset of foraminiferal sedimentary dna (seddna) sequences from svalbard. |
publisher |
Mendeley |
publishDate |
2020 |
url |
https://doi.org/10.17632/7kjkf8by5d.1 https://figshare.com/articles/Dataset_of_foraminiferal_sedimentary_DNA_sedDNA_sequences_from_Svalbard_/11938455 https://doi.org/10.17632/7kjkf8by5d |
long_lat |
ENVELOPE(22.400,22.400,79.800,79.800) ENVELOPE(22.188,22.188,80.165,80.165) ENVELOPE(15.569,15.569,79.543,79.543) |
geographic |
Arctic Nordaustlandet Rijpfjorden Svalbard Svalbard Archipelago Wijdefjorden |
geographic_facet |
Arctic Nordaustlandet Rijpfjorden Svalbard Svalbard Archipelago Wijdefjorden |
genre |
Arctic Foraminifera* Isfjord* Isfjorden Nordaustlandet Rijpfjord* Svalbard Wijdefjord* |
genre_facet |
Arctic Foraminifera* Isfjord* Isfjorden Nordaustlandet Rijpfjord* Svalbard Wijdefjord* |
op_source |
10.17632/7kjkf8by5d.1 doi:10.17632/7kjkf8by5d.1 oai:figshare.com:article/11938455 10.17632/7kjkf8by5d doi:10.17632/7kjkf8by5d oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:160256 oai:easy.dans.knaw.nl:easy-dataset:160256 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::db814dc656a911b556dba42a331cebe9 10|re3data_____::7980778c78fb4cf0fab13ce2159030dc 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 |
op_relation |
http://dx.doi.org/10.17632/7kjkf8by5d.1 https://dx.doi.org/10.17632/7kjkf8by5d.1 https://figshare.com/articles/Dataset_of_foraminiferal_sedimentary_DNA_sedDNA_sequences_from_Svalbard_/11938455 http://dx.doi.org/10.17632/7kjkf8by5d https://dx.doi.org/10.17632/7kjkf8by5d |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.17632/7kjkf8by5d.1 https://doi.org/10.17632/7kjkf8by5d |
_version_ |
1766336038015336448 |