Data from: The biogeography of the atlantic salmon (Salmo salar) gut microbiome
Although understood in many vertebrate systems, the natural diversity of host-associated microbiota has been little studied in teleosts. For migratory fishes, successful exploitation of multiple habitats may affect and be affected by the composition of the intestinal microbiome. We collected 96 Salm...
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Data Archiving and Networked Services (DANS)
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Online Access: | https://doi.org/10.5061/dryad.f0h49 |
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fttriple:oai:gotriple.eu:50|dedup_wf_001::770156be83e9d07364356f55a9f93482 2023-05-15T15:32:20+02:00 Data from: The biogeography of the atlantic salmon (Salmo salar) gut microbiome Llewellyn, Martin S. McGinnity, Philip Dionne, Melanie Letourneau, Justine Thonier, Florian Carvalho, Gary R. Creer, Simon Derome, Nicolas 2020-06-18 https://doi.org/10.5061/dryad.f0h49 undefined unknown Data Archiving and Networked Services (DANS) http://dx.doi.org/10.5061/dryad.f0h49 https://dx.doi.org/10.5061/dryad.f0h49 lic_creative-commons oai:easy.dans.knaw.nl:easy-dataset:94920 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:94920 10.5061/dryad.f0h49 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c Life sciences medicine and health care Salmo salar Canada Ireland Greenland envir geo Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2020 fttriple https://doi.org/10.5061/dryad.f0h49 2023-01-22T17:16:06Z Although understood in many vertebrate systems, the natural diversity of host-associated microbiota has been little studied in teleosts. For migratory fishes, successful exploitation of multiple habitats may affect and be affected by the composition of the intestinal microbiome. We collected 96 Salmo salar from across the Atlantic encompassing both freshwater and marine phases. Dramatic differences between environmental and gut bacterial communities were observed. Furthermore, community composition was not significantly impacted by geography. Instead life-cycle stage strongly defined both the diversity and identity of microbial assemblages in the gut, with evidence for community destabilisation in migratory phases. Mycoplasmataceae phylotypes were abundantly recovered in all life-cycle stages. Patterns of Mycoplasmataceae phylotype recruitment to the intestinal microbial community among sites and life-cycle stages support a dual role for deterministic and stochastic processes in defining the composition of the S. salar gut microbiome. raw_data_salmon_microbiomeSalmon salar gut microbiome sequences. Samples are identified by their "FLD0001.****_R1.fastq" code in the samples' name.raw_data.zip Dataset Atlantic salmon Greenland Salmo salar Unknown Canada Greenland |
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Open Polar |
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topic |
Life sciences medicine and health care Salmo salar Canada Ireland Greenland envir geo |
spellingShingle |
Life sciences medicine and health care Salmo salar Canada Ireland Greenland envir geo Llewellyn, Martin S. McGinnity, Philip Dionne, Melanie Letourneau, Justine Thonier, Florian Carvalho, Gary R. Creer, Simon Derome, Nicolas Data from: The biogeography of the atlantic salmon (Salmo salar) gut microbiome |
topic_facet |
Life sciences medicine and health care Salmo salar Canada Ireland Greenland envir geo |
description |
Although understood in many vertebrate systems, the natural diversity of host-associated microbiota has been little studied in teleosts. For migratory fishes, successful exploitation of multiple habitats may affect and be affected by the composition of the intestinal microbiome. We collected 96 Salmo salar from across the Atlantic encompassing both freshwater and marine phases. Dramatic differences between environmental and gut bacterial communities were observed. Furthermore, community composition was not significantly impacted by geography. Instead life-cycle stage strongly defined both the diversity and identity of microbial assemblages in the gut, with evidence for community destabilisation in migratory phases. Mycoplasmataceae phylotypes were abundantly recovered in all life-cycle stages. Patterns of Mycoplasmataceae phylotype recruitment to the intestinal microbial community among sites and life-cycle stages support a dual role for deterministic and stochastic processes in defining the composition of the S. salar gut microbiome. raw_data_salmon_microbiomeSalmon salar gut microbiome sequences. Samples are identified by their "FLD0001.****_R1.fastq" code in the samples' name.raw_data.zip |
format |
Dataset |
author |
Llewellyn, Martin S. McGinnity, Philip Dionne, Melanie Letourneau, Justine Thonier, Florian Carvalho, Gary R. Creer, Simon Derome, Nicolas |
author_facet |
Llewellyn, Martin S. McGinnity, Philip Dionne, Melanie Letourneau, Justine Thonier, Florian Carvalho, Gary R. Creer, Simon Derome, Nicolas |
author_sort |
Llewellyn, Martin S. |
title |
Data from: The biogeography of the atlantic salmon (Salmo salar) gut microbiome |
title_short |
Data from: The biogeography of the atlantic salmon (Salmo salar) gut microbiome |
title_full |
Data from: The biogeography of the atlantic salmon (Salmo salar) gut microbiome |
title_fullStr |
Data from: The biogeography of the atlantic salmon (Salmo salar) gut microbiome |
title_full_unstemmed |
Data from: The biogeography of the atlantic salmon (Salmo salar) gut microbiome |
title_sort |
data from: the biogeography of the atlantic salmon (salmo salar) gut microbiome |
publisher |
Data Archiving and Networked Services (DANS) |
publishDate |
2020 |
url |
https://doi.org/10.5061/dryad.f0h49 |
geographic |
Canada Greenland |
geographic_facet |
Canada Greenland |
genre |
Atlantic salmon Greenland Salmo salar |
genre_facet |
Atlantic salmon Greenland Salmo salar |
op_source |
oai:easy.dans.knaw.nl:easy-dataset:94920 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:94920 10.5061/dryad.f0h49 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c |
op_relation |
http://dx.doi.org/10.5061/dryad.f0h49 https://dx.doi.org/10.5061/dryad.f0h49 |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5061/dryad.f0h49 |
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1766362852080222208 |