Data from: Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange, and distinct demographic histories
Widely distributed taxa provide an opportunity to compare biogeographic responses to climatic fluctuations on multiple continents and to investigate speciation. We conducted the most geographically and genomically comprehensive study to date of the red fox (Vulpes vulpes), the world's most wide...
Main Authors: | , , , , , , , , |
---|---|
Format: | Dataset |
Language: | unknown |
Published: |
Dryad
2020
|
Subjects: | |
Online Access: | https://doi.org/10.5061/dryad.4g5gb |
id |
fttriple:oai:gotriple.eu:50|dedup_wf_001::6e639ab6278c6cbfa5e186b64db834fc |
---|---|
record_format |
openpolar |
spelling |
fttriple:oai:gotriple.eu:50|dedup_wf_001::6e639ab6278c6cbfa5e186b64db834fc 2023-05-15T15:44:16+02:00 Data from: Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange, and distinct demographic histories Statham, Mark J. Wang, Zhenghuan Soulsbury, Carl D. Janecka, Jan Sacks, Benjamin N. Aubry, Keith B. Berry, Oliver Edwards, Ceiridwen J. Murdoch, James 2020-07-18 https://doi.org/10.5061/dryad.4g5gb undefined unknown Dryad https://dx.doi.org/10.5061/dryad.4g5gb http://dx.doi.org/10.5061/dryad.4g5gb lic_creative-commons 10.5061/dryad.4g5gb oai:easy.dans.knaw.nl:easy-dataset:85899 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:85899 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c Nuclear DNA Global phylogeography Mitochondrial DNA Y chromosome Vulpes fulva Holocene speciation Pleistocene Vulpes vulpes Europe Asia North Africa North America Life sciences medicine and health care envir geo Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2020 fttriple https://doi.org/10.5061/dryad.4g5gb 2023-01-22T17:22:56Z Widely distributed taxa provide an opportunity to compare biogeographic responses to climatic fluctuations on multiple continents and to investigate speciation. We conducted the most geographically and genomically comprehensive study to date of the red fox (Vulpes vulpes), the world's most widely distributed wild terrestrial carnivore. Analyses of 697 bp of mitochondrial sequence in ~1000 individuals suggested an ancient Middle Eastern origin for all extant red foxes and a 400 kya (SD = 139 kya) origin of the primary North American (Nearctic) clade. Demographic analyses indicated a major expansion in Eurasia during the last glaciation (~50 kya), coinciding with a previously described secondary transfer of a single matriline (Holarctic) to North America. In contrast, North American matrilines (including the transferred portion of Holarctic clade) exhibited no signatures of expansion until the end of the Pleistocene (~12 kya). Analyses of 11 autosomal loci from a subset of foxes supported the colonization timeframe suggested by mtDNA (and the fossil record) but, in contrast, reflected no detectable secondary transfer, resulting in the most fundamental genomic division of red foxes at the Bering Strait. Endemic continental Y-chromosome clades further supported this pattern. Thus, intercontinental genomic exchange was overall very limited, consistent with long-term reproductive isolation since the initial colonization of North America. Based on continental divergence times in other carnivoran species pairs, our findings support a model of peripatric speciation and are consistent with the previous classification of the North American red fox as a distinct species, V. fulva. Statham_nuclear_species_tree_800millionStatham_MrBayes_tree_12millionStatham_Beast_mtDNA_modern_only_100millionStatham_Beast_mtDNA_modern+ancient_100MStatham_Beast_Input_Nuclear_strict_800M_20131127ii*Beast input fileStatham_mtDNA_unique_haplotypes_alignmentStatham_Fox_mtDNA_datasetRed fox mtDNA dataStatham_Fox_Autosomal_Y_and_mtDNAcombinations Dataset Bering Strait Unknown Bering Strait Kya ENVELOPE(8.308,8.308,63.772,63.772) |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
fttriple |
language |
unknown |
topic |
Nuclear DNA Global phylogeography Mitochondrial DNA Y chromosome Vulpes fulva Holocene speciation Pleistocene Vulpes vulpes Europe Asia North Africa North America Life sciences medicine and health care envir geo |
spellingShingle |
Nuclear DNA Global phylogeography Mitochondrial DNA Y chromosome Vulpes fulva Holocene speciation Pleistocene Vulpes vulpes Europe Asia North Africa North America Life sciences medicine and health care envir geo Statham, Mark J. Wang, Zhenghuan Soulsbury, Carl D. Janecka, Jan Sacks, Benjamin N. Aubry, Keith B. Berry, Oliver Edwards, Ceiridwen J. Murdoch, James Data from: Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange, and distinct demographic histories |
topic_facet |
Nuclear DNA Global phylogeography Mitochondrial DNA Y chromosome Vulpes fulva Holocene speciation Pleistocene Vulpes vulpes Europe Asia North Africa North America Life sciences medicine and health care envir geo |
description |
Widely distributed taxa provide an opportunity to compare biogeographic responses to climatic fluctuations on multiple continents and to investigate speciation. We conducted the most geographically and genomically comprehensive study to date of the red fox (Vulpes vulpes), the world's most widely distributed wild terrestrial carnivore. Analyses of 697 bp of mitochondrial sequence in ~1000 individuals suggested an ancient Middle Eastern origin for all extant red foxes and a 400 kya (SD = 139 kya) origin of the primary North American (Nearctic) clade. Demographic analyses indicated a major expansion in Eurasia during the last glaciation (~50 kya), coinciding with a previously described secondary transfer of a single matriline (Holarctic) to North America. In contrast, North American matrilines (including the transferred portion of Holarctic clade) exhibited no signatures of expansion until the end of the Pleistocene (~12 kya). Analyses of 11 autosomal loci from a subset of foxes supported the colonization timeframe suggested by mtDNA (and the fossil record) but, in contrast, reflected no detectable secondary transfer, resulting in the most fundamental genomic division of red foxes at the Bering Strait. Endemic continental Y-chromosome clades further supported this pattern. Thus, intercontinental genomic exchange was overall very limited, consistent with long-term reproductive isolation since the initial colonization of North America. Based on continental divergence times in other carnivoran species pairs, our findings support a model of peripatric speciation and are consistent with the previous classification of the North American red fox as a distinct species, V. fulva. Statham_nuclear_species_tree_800millionStatham_MrBayes_tree_12millionStatham_Beast_mtDNA_modern_only_100millionStatham_Beast_mtDNA_modern+ancient_100MStatham_Beast_Input_Nuclear_strict_800M_20131127ii*Beast input fileStatham_mtDNA_unique_haplotypes_alignmentStatham_Fox_mtDNA_datasetRed fox mtDNA dataStatham_Fox_Autosomal_Y_and_mtDNAcombinations |
format |
Dataset |
author |
Statham, Mark J. Wang, Zhenghuan Soulsbury, Carl D. Janecka, Jan Sacks, Benjamin N. Aubry, Keith B. Berry, Oliver Edwards, Ceiridwen J. Murdoch, James |
author_facet |
Statham, Mark J. Wang, Zhenghuan Soulsbury, Carl D. Janecka, Jan Sacks, Benjamin N. Aubry, Keith B. Berry, Oliver Edwards, Ceiridwen J. Murdoch, James |
author_sort |
Statham, Mark J. |
title |
Data from: Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange, and distinct demographic histories |
title_short |
Data from: Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange, and distinct demographic histories |
title_full |
Data from: Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange, and distinct demographic histories |
title_fullStr |
Data from: Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange, and distinct demographic histories |
title_full_unstemmed |
Data from: Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange, and distinct demographic histories |
title_sort |
data from: range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange, and distinct demographic histories |
publisher |
Dryad |
publishDate |
2020 |
url |
https://doi.org/10.5061/dryad.4g5gb |
long_lat |
ENVELOPE(8.308,8.308,63.772,63.772) |
geographic |
Bering Strait Kya |
geographic_facet |
Bering Strait Kya |
genre |
Bering Strait |
genre_facet |
Bering Strait |
op_source |
10.5061/dryad.4g5gb oai:easy.dans.knaw.nl:easy-dataset:85899 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:85899 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c |
op_relation |
https://dx.doi.org/10.5061/dryad.4g5gb http://dx.doi.org/10.5061/dryad.4g5gb |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5061/dryad.4g5gb |
_version_ |
1766378564559568896 |