Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway

While there are extensive macro- and microfossil records of a range of plants and animals from Quaternary records, earthworms and their close relatives among annelids are not preserved as fossils, and therefore we have limited knowledge of their Quaternary distributions. This lack of fossils means t...

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Main Authors: Lammers, Youri, Clarke, Charlotte L., Erséus, Christer, Brown, Antony G., Edwards, Mary E., Gielly, Ludovic, Haflidason, Haflidi, Mangerud, Jan, Rota, Emilia, Svendsen, John Inge, Alsos, Inger Greve
Format: Dataset
Language:English
Published: Dryad 2019
Subjects:
geo
Online Access:https://doi.org/10.5061/dryad.g0f4hv0
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spelling fttriple:oai:gotriple.eu:50|dedup_wf_001::6dfc1e72fa59a22b43411f0f9b4692a5 2023-05-15T15:02:13+02:00 Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway Lammers, Youri Clarke, Charlotte L. Erséus, Christer Brown, Antony G. Edwards, Mary E. Gielly, Ludovic Haflidason, Haflidi Mangerud, Jan Rota, Emilia Svendsen, John Inge Alsos, Inger Greve 2019-01-01 https://doi.org/10.5061/dryad.g0f4hv0 en eng Dryad http://dx.doi.org/10.5061/dryad.g0f4hv0 https://dx.doi.org/10.5061/dryad.g0f4hv0 lic_creative-commons 10.5061/dryad.g0f4hv0 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:117097 oai:easy.dans.knaw.nl:easy-dataset:117097 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 re3data_____::r3d100000044 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 Metabarcoding Mammalia Environmental DNA clitellates Quaternary ancient DNA Clitellata Life sciences medicine and health care Varanger Norway Polar Urals Russia Arctic geo archeo Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2019 fttriple https://doi.org/10.5061/dryad.g0f4hv0 2023-01-22T17:23:13Z While there are extensive macro- and microfossil records of a range of plants and animals from Quaternary records, earthworms and their close relatives among annelids are not preserved as fossils, and therefore we have limited knowledge of their Quaternary distributions. This lack of fossils means that clitellate worms (Annelida) are currently underused in palaeoecological research, even though they can provide valuable information about terrestrial and aquatic environmental conditions. Their DNA might be preserved in sediments, which offers an alternative method for detection. Here we analyse lacustrine sediments from lakes in the Polar Urals, Arctic Russia, covering the period 24,000-1,300 cal. years BP, and NE Norway (10,700-3,300 cal. years BP) using a universal mammal 16S rDNA marker. While mammals were recorded using the marker (reindeer was detected twice in the Polar Urals core at 23,000 and 14,000 cal. years BP, and four times in the Norwegian core at 11,000 cal. years BP and between 3,600-3,300 cal. years BP), worm extracellular DNA “bycatch” was rather high. In this paper we present the first reported worm detection from ancient DNA. Our results demonstrate that both aquatic and terrestrial clitellates can be identified in late-Quaternary lacustrine sediments, and the ecological information retrievable from this group warrants further research with a more targeted approach. FilterBarcodingR script used for the Filtering of the OBITOOLS output.Sample_tag_primer_URAL-MamExcel file containing the primer tags and sample names for the Polar Urals run. The primer information was used by OBITOOLS to demultiplex the data.Sample_tag_primer_Varanger-MamP007Excel file containing the primer tags and sample names for the Varanger run. The primer information was used by OBITOOLS to demultiplex the data.URAL-Mam.un.an.C1.L13.obiclean.r5.HpS.M-iden.ann.sort_10_23_1_2_1The filtered OBITOOLS output for the Polar Urals run.Hubia2-Mammal.ali.uniq.c2.cl.M-iden.ann.sort_10_23_1_2_1The filtered Varanger OBITOOLS ... Dataset Arctic Northern Norway Varanger Unknown Arctic Norway
institution Open Polar
collection Unknown
op_collection_id fttriple
language English
topic Metabarcoding
Mammalia
Environmental DNA
clitellates
Quaternary
ancient DNA
Clitellata
Life sciences
medicine and health care
Varanger
Norway
Polar Urals
Russia
Arctic
geo
archeo
spellingShingle Metabarcoding
Mammalia
Environmental DNA
clitellates
Quaternary
ancient DNA
Clitellata
Life sciences
medicine and health care
Varanger
Norway
Polar Urals
Russia
Arctic
geo
archeo
Lammers, Youri
Clarke, Charlotte L.
Erséus, Christer
Brown, Antony G.
Edwards, Mary E.
Gielly, Ludovic
Haflidason, Haflidi
Mangerud, Jan
Rota, Emilia
Svendsen, John Inge
Alsos, Inger Greve
Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
topic_facet Metabarcoding
Mammalia
Environmental DNA
clitellates
Quaternary
ancient DNA
Clitellata
Life sciences
medicine and health care
Varanger
Norway
Polar Urals
Russia
Arctic
geo
archeo
description While there are extensive macro- and microfossil records of a range of plants and animals from Quaternary records, earthworms and their close relatives among annelids are not preserved as fossils, and therefore we have limited knowledge of their Quaternary distributions. This lack of fossils means that clitellate worms (Annelida) are currently underused in palaeoecological research, even though they can provide valuable information about terrestrial and aquatic environmental conditions. Their DNA might be preserved in sediments, which offers an alternative method for detection. Here we analyse lacustrine sediments from lakes in the Polar Urals, Arctic Russia, covering the period 24,000-1,300 cal. years BP, and NE Norway (10,700-3,300 cal. years BP) using a universal mammal 16S rDNA marker. While mammals were recorded using the marker (reindeer was detected twice in the Polar Urals core at 23,000 and 14,000 cal. years BP, and four times in the Norwegian core at 11,000 cal. years BP and between 3,600-3,300 cal. years BP), worm extracellular DNA “bycatch” was rather high. In this paper we present the first reported worm detection from ancient DNA. Our results demonstrate that both aquatic and terrestrial clitellates can be identified in late-Quaternary lacustrine sediments, and the ecological information retrievable from this group warrants further research with a more targeted approach. FilterBarcodingR script used for the Filtering of the OBITOOLS output.Sample_tag_primer_URAL-MamExcel file containing the primer tags and sample names for the Polar Urals run. The primer information was used by OBITOOLS to demultiplex the data.Sample_tag_primer_Varanger-MamP007Excel file containing the primer tags and sample names for the Varanger run. The primer information was used by OBITOOLS to demultiplex the data.URAL-Mam.un.an.C1.L13.obiclean.r5.HpS.M-iden.ann.sort_10_23_1_2_1The filtered OBITOOLS output for the Polar Urals run.Hubia2-Mammal.ali.uniq.c2.cl.M-iden.ann.sort_10_23_1_2_1The filtered Varanger OBITOOLS ...
format Dataset
author Lammers, Youri
Clarke, Charlotte L.
Erséus, Christer
Brown, Antony G.
Edwards, Mary E.
Gielly, Ludovic
Haflidason, Haflidi
Mangerud, Jan
Rota, Emilia
Svendsen, John Inge
Alsos, Inger Greve
author_facet Lammers, Youri
Clarke, Charlotte L.
Erséus, Christer
Brown, Antony G.
Edwards, Mary E.
Gielly, Ludovic
Haflidason, Haflidi
Mangerud, Jan
Rota, Emilia
Svendsen, John Inge
Alsos, Inger Greve
author_sort Lammers, Youri
title Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
title_short Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
title_full Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
title_fullStr Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
title_full_unstemmed Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
title_sort data from: clitellate worms (annelida) in lateglacial and holocene sedimentary dna records from the polar urals and northern norway
publisher Dryad
publishDate 2019
url https://doi.org/10.5061/dryad.g0f4hv0
geographic Arctic
Norway
geographic_facet Arctic
Norway
genre Arctic
Northern Norway
Varanger
genre_facet Arctic
Northern Norway
Varanger
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