Data from: Range wide parallel climate-associated genomic clines in Atlantic salmon
Clinal variation across replicated environmental gradients can reveal evidence of local adaptation, providing insight into the demographic and evolutionary processes that shape intraspecific diversity. Using 1773 genome-wide single nucleotide polymorphisms we evaluated latitudinal variation in allel...
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fttriple:oai:gotriple.eu:50|dedup_wf_001::6dfaf367162209ed0c7c99cf7a4479e5 2023-05-15T15:31:06+02:00 Data from: Range wide parallel climate-associated genomic clines in Atlantic salmon Jeffery, Nicholas W. Stanley, Ryan R. E. Wringe, Brendan F. Guijarro-Sabaniel, Javier Bourret, Vincent Bernatchez, Louis Bentzen, Paul Beiko, Robert G. Gilbey, John Clement, Marie Bradbury, Ian R. 2017-10-13 https://doi.org/10.5061/dryad.cv20d en eng Dryad http://dx.doi.org/10.5061/dryad.cv20d https://dx.doi.org/10.5061/dryad.cv20d lic_creative-commons 10.5061/dryad.cv20d oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:98914 oai:easy.dans.knaw.nl:easy-dataset:98914 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c 10|openaire____::55045bd2a65019fd8e6741a755395c8c 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 Cline Salmo salar SNPs Atlantic salmon Life sciences medicine and health care envir psy Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2017 fttriple https://doi.org/10.5061/dryad.cv20d 2023-01-22T17:23:00Z Clinal variation across replicated environmental gradients can reveal evidence of local adaptation, providing insight into the demographic and evolutionary processes that shape intraspecific diversity. Using 1773 genome-wide single nucleotide polymorphisms we evaluated latitudinal variation in allele frequency for 134 populations of North American and European Atlantic salmon (Salmo salar). We detected 84 (4.74%) and 195 (11%) loci showing clinal patterns in North America and Europe respectively, with 12 clinal loci in common between continents. Clinal SNPs were evenly distributed across the salmon genome and logistic regression revealed significant associations with latitude and seasonal temperatures, particularly average spring temperature in both continents. Loci displaying parallel clines were associated with several metabolic and immune functions, suggesting a potential basis for climate associated adaptive differentiation. These climate-based clines collectively suggest evidence of large scale environmental associated differences on either side of the North Atlantic. Our results support patterns of parallel evolution on both sides of the North Atlantic, with evidence of both similar and divergent underlying genetic architecture. The identification of climate associated genomic clines illuminates the role of selection and demographic processes on intraspecific diversity in this species and provides a context in which to evaluate the impacts of climate change. Salmon_AllRivers_GenepopGenepop file of all European and North American rivers with 1773 loci.AllRivers_Oct2016_1773LociGP.txtGenepop files of clinal lociTwo genepop files with clinal loci from North American and European rivers.ClinalLoci_GP.zipEnvironmental DataEnvironmental data used in our study for climate associations with genetic clustering coefficients.EnvironmentalData.zipR_scriptsR scripts for selecting clinal loci based on our criteria and replicating our analyses looking at structure and climate associations. Dataset Atlantic salmon North Atlantic Salmo salar Unknown |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
fttriple |
language |
English |
topic |
Cline Salmo salar SNPs Atlantic salmon Life sciences medicine and health care envir psy |
spellingShingle |
Cline Salmo salar SNPs Atlantic salmon Life sciences medicine and health care envir psy Jeffery, Nicholas W. Stanley, Ryan R. E. Wringe, Brendan F. Guijarro-Sabaniel, Javier Bourret, Vincent Bernatchez, Louis Bentzen, Paul Beiko, Robert G. Gilbey, John Clement, Marie Bradbury, Ian R. Data from: Range wide parallel climate-associated genomic clines in Atlantic salmon |
topic_facet |
Cline Salmo salar SNPs Atlantic salmon Life sciences medicine and health care envir psy |
description |
Clinal variation across replicated environmental gradients can reveal evidence of local adaptation, providing insight into the demographic and evolutionary processes that shape intraspecific diversity. Using 1773 genome-wide single nucleotide polymorphisms we evaluated latitudinal variation in allele frequency for 134 populations of North American and European Atlantic salmon (Salmo salar). We detected 84 (4.74%) and 195 (11%) loci showing clinal patterns in North America and Europe respectively, with 12 clinal loci in common between continents. Clinal SNPs were evenly distributed across the salmon genome and logistic regression revealed significant associations with latitude and seasonal temperatures, particularly average spring temperature in both continents. Loci displaying parallel clines were associated with several metabolic and immune functions, suggesting a potential basis for climate associated adaptive differentiation. These climate-based clines collectively suggest evidence of large scale environmental associated differences on either side of the North Atlantic. Our results support patterns of parallel evolution on both sides of the North Atlantic, with evidence of both similar and divergent underlying genetic architecture. The identification of climate associated genomic clines illuminates the role of selection and demographic processes on intraspecific diversity in this species and provides a context in which to evaluate the impacts of climate change. Salmon_AllRivers_GenepopGenepop file of all European and North American rivers with 1773 loci.AllRivers_Oct2016_1773LociGP.txtGenepop files of clinal lociTwo genepop files with clinal loci from North American and European rivers.ClinalLoci_GP.zipEnvironmental DataEnvironmental data used in our study for climate associations with genetic clustering coefficients.EnvironmentalData.zipR_scriptsR scripts for selecting clinal loci based on our criteria and replicating our analyses looking at structure and climate associations. |
format |
Dataset |
author |
Jeffery, Nicholas W. Stanley, Ryan R. E. Wringe, Brendan F. Guijarro-Sabaniel, Javier Bourret, Vincent Bernatchez, Louis Bentzen, Paul Beiko, Robert G. Gilbey, John Clement, Marie Bradbury, Ian R. |
author_facet |
Jeffery, Nicholas W. Stanley, Ryan R. E. Wringe, Brendan F. Guijarro-Sabaniel, Javier Bourret, Vincent Bernatchez, Louis Bentzen, Paul Beiko, Robert G. Gilbey, John Clement, Marie Bradbury, Ian R. |
author_sort |
Jeffery, Nicholas W. |
title |
Data from: Range wide parallel climate-associated genomic clines in Atlantic salmon |
title_short |
Data from: Range wide parallel climate-associated genomic clines in Atlantic salmon |
title_full |
Data from: Range wide parallel climate-associated genomic clines in Atlantic salmon |
title_fullStr |
Data from: Range wide parallel climate-associated genomic clines in Atlantic salmon |
title_full_unstemmed |
Data from: Range wide parallel climate-associated genomic clines in Atlantic salmon |
title_sort |
data from: range wide parallel climate-associated genomic clines in atlantic salmon |
publisher |
Dryad |
publishDate |
2017 |
url |
https://doi.org/10.5061/dryad.cv20d |
genre |
Atlantic salmon North Atlantic Salmo salar |
genre_facet |
Atlantic salmon North Atlantic Salmo salar |
op_source |
10.5061/dryad.cv20d oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:98914 oai:easy.dans.knaw.nl:easy-dataset:98914 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c 10|openaire____::55045bd2a65019fd8e6741a755395c8c 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 |
op_relation |
http://dx.doi.org/10.5061/dryad.cv20d https://dx.doi.org/10.5061/dryad.cv20d |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5061/dryad.cv20d |
_version_ |
1766361591123542016 |