Data from: Complex patterns of sex-biased demography in canines
The demographic history of dogs is complex, involving multiple bottlenecks, admixture events and artificial selection. However, existing genetic studies have not explored variance in the number of reproducing males and females, and whether it has changed across evolutionary time. While male-biased m...
Main Authors: | , , , |
---|---|
Format: | Dataset |
Language: | unknown |
Published: |
Dryad
2019
|
Subjects: | |
Online Access: | https://doi.org/10.5061/dryad.jd820r4 |
id |
fttriple:oai:gotriple.eu:50|dedup_wf_001::573bad2c9920a126dda95e82811da0ee |
---|---|
record_format |
openpolar |
spelling |
fttriple:oai:gotriple.eu:50|dedup_wf_001::573bad2c9920a126dda95e82811da0ee 2023-05-15T15:51:12+02:00 Data from: Complex patterns of sex-biased demography in canines Phung, Tanya N. Wayne, Robert K. Wilson, Melissa A. Lohmueller, Kirk E. 2019-06-12 https://doi.org/10.5061/dryad.jd820r4 undefined unknown Dryad https://dx.doi.org/10.5061/dryad.jd820r4 http://dx.doi.org/10.5061/dryad.jd820r4 lic_creative-commons 10.5061/dryad.jd820r4 oai:easy.dans.knaw.nl:easy-dataset:128618 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:128618 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c Canis lupus Life sciences medicine and health care anthro-se hist Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2019 fttriple https://doi.org/10.5061/dryad.jd820r4 2023-01-22T16:52:29Z The demographic history of dogs is complex, involving multiple bottlenecks, admixture events and artificial selection. However, existing genetic studies have not explored variance in the number of reproducing males and females, and whether it has changed across evolutionary time. While male-biased mating practices, such as male-biased migration and multiple paternity, have been observed in wolves, recent breeding practices could have led to female-biased mating patterns in breed dogs. For example, breed dogs are thought to have experienced a popular sire effect, where a small number of males father many offspring with a large number of females. Here we use genetic variation data to test how widespread sex-biased mating practices in canines are during different evolutionary time points. Using whole-genome sequence data from 33 dogs and wolves, we show that patterns of diversity on the X chromosome and autosomes are consistent with a higher number of reproducing males than females over ancient evolutionary history in both dogs and wolves, suggesting that mating practices did not change during early dog domestication. By contrast, since breed formation, we found evidence for a larger number of reproducing females than males in breed dogs, consistent with the popular sire effect. Our results confirm that canine demography has been complex, with opposing sex-biased processes occurring throughout their history. The signatures observed in genetic data are consistent with documented sex-biased mating practices in both the wild and domesticated populations, suggesting that these mating practices are pervasive. Filtered VCF filesThis file contains the variants that were genotyped using GATK3. A GATK hard-filter has been applied.6_SV_rmClusterSNP_BiSNP_SV_HardFilter_SV_4GS_5TM_6AW_12BD_6GW_joint_allchr_HighQualSites_processed.vcf.gzPutatively neutral regionsThis zipped directory includes putatively neutral regions for the cutoff values of genetic distance to the nearest gene used in the article (0.0 cM, 0.2 cM, 0.4 cM, 0.6 ... Dataset Canis lupus Unknown |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
fttriple |
language |
unknown |
topic |
Canis lupus Life sciences medicine and health care anthro-se hist |
spellingShingle |
Canis lupus Life sciences medicine and health care anthro-se hist Phung, Tanya N. Wayne, Robert K. Wilson, Melissa A. Lohmueller, Kirk E. Data from: Complex patterns of sex-biased demography in canines |
topic_facet |
Canis lupus Life sciences medicine and health care anthro-se hist |
description |
The demographic history of dogs is complex, involving multiple bottlenecks, admixture events and artificial selection. However, existing genetic studies have not explored variance in the number of reproducing males and females, and whether it has changed across evolutionary time. While male-biased mating practices, such as male-biased migration and multiple paternity, have been observed in wolves, recent breeding practices could have led to female-biased mating patterns in breed dogs. For example, breed dogs are thought to have experienced a popular sire effect, where a small number of males father many offspring with a large number of females. Here we use genetic variation data to test how widespread sex-biased mating practices in canines are during different evolutionary time points. Using whole-genome sequence data from 33 dogs and wolves, we show that patterns of diversity on the X chromosome and autosomes are consistent with a higher number of reproducing males than females over ancient evolutionary history in both dogs and wolves, suggesting that mating practices did not change during early dog domestication. By contrast, since breed formation, we found evidence for a larger number of reproducing females than males in breed dogs, consistent with the popular sire effect. Our results confirm that canine demography has been complex, with opposing sex-biased processes occurring throughout their history. The signatures observed in genetic data are consistent with documented sex-biased mating practices in both the wild and domesticated populations, suggesting that these mating practices are pervasive. Filtered VCF filesThis file contains the variants that were genotyped using GATK3. A GATK hard-filter has been applied.6_SV_rmClusterSNP_BiSNP_SV_HardFilter_SV_4GS_5TM_6AW_12BD_6GW_joint_allchr_HighQualSites_processed.vcf.gzPutatively neutral regionsThis zipped directory includes putatively neutral regions for the cutoff values of genetic distance to the nearest gene used in the article (0.0 cM, 0.2 cM, 0.4 cM, 0.6 ... |
format |
Dataset |
author |
Phung, Tanya N. Wayne, Robert K. Wilson, Melissa A. Lohmueller, Kirk E. |
author_facet |
Phung, Tanya N. Wayne, Robert K. Wilson, Melissa A. Lohmueller, Kirk E. |
author_sort |
Phung, Tanya N. |
title |
Data from: Complex patterns of sex-biased demography in canines |
title_short |
Data from: Complex patterns of sex-biased demography in canines |
title_full |
Data from: Complex patterns of sex-biased demography in canines |
title_fullStr |
Data from: Complex patterns of sex-biased demography in canines |
title_full_unstemmed |
Data from: Complex patterns of sex-biased demography in canines |
title_sort |
data from: complex patterns of sex-biased demography in canines |
publisher |
Dryad |
publishDate |
2019 |
url |
https://doi.org/10.5061/dryad.jd820r4 |
genre |
Canis lupus |
genre_facet |
Canis lupus |
op_source |
10.5061/dryad.jd820r4 oai:easy.dans.knaw.nl:easy-dataset:128618 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:128618 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c |
op_relation |
https://dx.doi.org/10.5061/dryad.jd820r4 http://dx.doi.org/10.5061/dryad.jd820r4 |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5061/dryad.jd820r4 |
_version_ |
1766386283530158080 |