Time-calibrated molecular phylogeny of pteropods
Pteropods are a widespread group of holoplanktonic gastropod molluscs and are uniquely suitable for study of long-term evolutionary processes in the open ocean because they are the only living metazoan plankton with a good fossil record. Pteropods have been proposed as bioindicators to monitor the i...
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General Biochemistry Genetics and Molecular Biology General Agricultural and Biological Sciences General Medicine Research Article Biology and Life Sciences Paleontology Fossils Fossil Calibration Earth Sciences Evolutionary Systematics Taxonomy Computer and Information Sciences Data Management Phylogenetic Analysis Research and Analysis Methods Database and Informatics Methods Bioinformatics Sequence Analysis Sequence Alignment Paleogenetics Marine and Aquatic Sciences Bodies of Water Oceans Marine Fossils geo stat |
spellingShingle |
General Biochemistry Genetics and Molecular Biology General Agricultural and Biological Sciences General Medicine Research Article Biology and Life Sciences Paleontology Fossils Fossil Calibration Earth Sciences Evolutionary Systematics Taxonomy Computer and Information Sciences Data Management Phylogenetic Analysis Research and Analysis Methods Database and Informatics Methods Bioinformatics Sequence Analysis Sequence Alignment Paleogenetics Marine and Aquatic Sciences Bodies of Water Oceans Marine Fossils geo stat Ferdinand Marlétaz Alice K. Burridge Karen J. Osborn Christine Hörnlein Rebeca Gasca Martin Hughes Steph B. J. Menken Stephanie L. Bush A.C. Pierrot-Bults Jeremy R. Young Jonathan A. Todd Arie W. Janssen Ellinor Michel Katja T. C. A. Peijnenburg Time-calibrated molecular phylogeny of pteropods |
topic_facet |
General Biochemistry Genetics and Molecular Biology General Agricultural and Biological Sciences General Medicine Research Article Biology and Life Sciences Paleontology Fossils Fossil Calibration Earth Sciences Evolutionary Systematics Taxonomy Computer and Information Sciences Data Management Phylogenetic Analysis Research and Analysis Methods Database and Informatics Methods Bioinformatics Sequence Analysis Sequence Alignment Paleogenetics Marine and Aquatic Sciences Bodies of Water Oceans Marine Fossils geo stat |
description |
Pteropods are a widespread group of holoplanktonic gastropod molluscs and are uniquely suitable for study of long-term evolutionary processes in the open ocean because they are the only living metazoan plankton with a good fossil record. Pteropods have been proposed as bioindicators to monitor the impacts of ocean acidification and in consequence have attracted considerable research interest, however, a robust evolutionary framework for the group is still lacking. Here we reconstruct their phylogenetic relationships and examine the evolutionary history of pteropods based on combined analyses of Cytochrome Oxidase I, 28S, and 18S ribosomal rRNA sequences and a molecular clock calibrated using fossils and the estimated timing of the formation of the Isthmus of Panama. Euthecosomes with uncoiled shells were monophyletic with Creseis as the earliest diverging lineage, estimated at 41–38 million years ago (mya). The coiled euthecosomes (Limacina, Heliconoides, Thielea) were not monophyletic contrary to the accepted morphology-based taxonomy; however, due to their high rate heterogeneity no firm conclusions can be drawn. We found strong support for monophyly of most euthecosome genera, but Clio appeared as a polyphyletic group, and Diacavolinia grouped within Cavolinia, making the latter genus paraphyletic. The highest evolutionary rates were observed in Heliconoides inflatus and Limacina bulimoides for both 28S and 18S partitions. Using a fossil-calibrated phylogeny that sets the first occurrence of coiled euthecosomes at 79–66 mya, we estimate that uncoiled euthecosomes evolved 51–42 mya and that most extant uncoiled genera originated 40–15 mya. These findings are congruent with a molecular clock analysis using the Isthmus of Panama formation as an independent calibration. Although not all phylogenetic relationships could be resolved based on three molecular markers, this study provides a useful resource to study pteropod diversity and provides general insight into the processes that generate and maintain their ... |
author2 |
Vermeij, GJ Freshwater and Marine Ecology (IBED, FNWI) Evolutionary and Population Biology (IBED, FNWI) |
format |
Article in Journal/Newspaper |
author |
Ferdinand Marlétaz Alice K. Burridge Karen J. Osborn Christine Hörnlein Rebeca Gasca Martin Hughes Steph B. J. Menken Stephanie L. Bush A.C. Pierrot-Bults Jeremy R. Young Jonathan A. Todd Arie W. Janssen Ellinor Michel Katja T. C. A. Peijnenburg |
author_facet |
Ferdinand Marlétaz Alice K. Burridge Karen J. Osborn Christine Hörnlein Rebeca Gasca Martin Hughes Steph B. J. Menken Stephanie L. Bush A.C. Pierrot-Bults Jeremy R. Young Jonathan A. Todd Arie W. Janssen Ellinor Michel Katja T. C. A. Peijnenburg |
author_sort |
Ferdinand Marlétaz |
title |
Time-calibrated molecular phylogeny of pteropods |
title_short |
Time-calibrated molecular phylogeny of pteropods |
title_full |
Time-calibrated molecular phylogeny of pteropods |
title_fullStr |
Time-calibrated molecular phylogeny of pteropods |
title_full_unstemmed |
Time-calibrated molecular phylogeny of pteropods |
title_sort |
time-calibrated molecular phylogeny of pteropods |
publisher |
Public Library of Science (PLoS) |
publishDate |
2017 |
url |
https://doi.org/10.1371/journal.pone.0177325 http://hdl.handle.net/10141/622236 http://id.nii.ac.jp/1394/00000216/ https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0177325&type=printable https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177325 https://www.ncbi.nlm.nih.gov/pubmed/28604805 http://europepmc.org/articles/PMC5467808 https://www.narcis.nl/publication/RecordID/oai%3Adare.uva.nl%3Apublications%2Fa81b0293-7689-4037-b133-483203b57b14 https://ui.adsabs.harvard.edu/abs/2017PLoSO.1277325B/abstract https://repository.si.edu/handle/10088/32601 https://discovery.ucl.ac.uk/id/eprint/10045387/ https://core.ac.uk/display/154748226 https://academic.microsoft.com/#/detail/2625734468 https://dare.uva.nl/personal/pure/en/publications/timecalibrated-molecular-phylogeny-of-pteropods(a81b0293-7689-4037-b133-483203b57b14).html http://europepmc.org/articles/PMC5467808?pdf=render |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_source |
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http://dx.doi.org/10.1371/journal.pone.0177325 https://dx.doi.org/10.1371/journal.pone.0177325 http://hdl.handle.net/10141/622236 http://id.nii.ac.jp/1394/00000216/ http://dx.plos.org/10.1371/journal.pone.0177325 https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0177325&type=printable https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177325 https://www.ncbi.nlm.nih.gov/pubmed/28604805 http://europepmc.org/articles/PMC5467808 https://www.narcis.nl/publication/RecordID/oai%3Adare.uva.nl%3Apublications%2Fa81b0293-7689-4037-b133-483203b57b14 https://ui.adsabs.harvard.edu/abs/2017PLoSO.1277325B/abstract https://repository.si.edu/handle/10088/32601 https://dx.plos.org/10.1371/journal.pone.0177325 https://discovery.ucl.ac.uk/id/eprint/10045387/ https://core.ac.uk/display/154748226 https://academic.microsoft.com/#/detail/2625734468 https://dare.uva.nl/personal/pure/en/publications/timecalibrated-molecular-phylogeny-of-pteropods(a81b0293-7689-4037-b133-483203b57b14).html http://europepmc.org/articles/PMC5467808?pdf=render |
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PLOS ONE |
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e0177325 |
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fttriple:oai:gotriple.eu:50|dedup_wf_001::4e8741ffe23c445bb7fff0c7358d9ffc 2023-05-15T17:52:09+02:00 Time-calibrated molecular phylogeny of pteropods Ferdinand Marlétaz Alice K. Burridge Karen J. Osborn Christine Hörnlein Rebeca Gasca Martin Hughes Steph B. J. Menken Stephanie L. Bush A.C. Pierrot-Bults Jeremy R. Young Jonathan A. Todd Arie W. Janssen Ellinor Michel Katja T. C. A. Peijnenburg Vermeij, GJ Freshwater and Marine Ecology (IBED, FNWI) Evolutionary and Population Biology (IBED, FNWI) 2017-06-12 https://doi.org/10.1371/journal.pone.0177325 http://hdl.handle.net/10141/622236 http://id.nii.ac.jp/1394/00000216/ https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0177325&type=printable https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177325 https://www.ncbi.nlm.nih.gov/pubmed/28604805 http://europepmc.org/articles/PMC5467808 https://www.narcis.nl/publication/RecordID/oai%3Adare.uva.nl%3Apublications%2Fa81b0293-7689-4037-b133-483203b57b14 https://ui.adsabs.harvard.edu/abs/2017PLoSO.1277325B/abstract https://repository.si.edu/handle/10088/32601 https://discovery.ucl.ac.uk/id/eprint/10045387/ https://core.ac.uk/display/154748226 https://academic.microsoft.com/#/detail/2625734468 https://dare.uva.nl/personal/pure/en/publications/timecalibrated-molecular-phylogeny-of-pteropods(a81b0293-7689-4037-b133-483203b57b14).html http://europepmc.org/articles/PMC5467808?pdf=render undefined unknown Public Library of Science (PLoS) http://dx.doi.org/10.1371/journal.pone.0177325 https://dx.doi.org/10.1371/journal.pone.0177325 http://hdl.handle.net/10141/622236 http://id.nii.ac.jp/1394/00000216/ http://dx.plos.org/10.1371/journal.pone.0177325 https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0177325&type=printable https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177325 https://www.ncbi.nlm.nih.gov/pubmed/28604805 http://europepmc.org/articles/PMC5467808 https://www.narcis.nl/publication/RecordID/oai%3Adare.uva.nl%3Apublications%2Fa81b0293-7689-4037-b133-483203b57b14 https://ui.adsabs.harvard.edu/abs/2017PLoSO.1277325B/abstract https://repository.si.edu/handle/10088/32601 https://dx.plos.org/10.1371/journal.pone.0177325 https://discovery.ucl.ac.uk/id/eprint/10045387/ https://core.ac.uk/display/154748226 https://academic.microsoft.com/#/detail/2625734468 https://dare.uva.nl/personal/pure/en/publications/timecalibrated-molecular-phylogeny-of-pteropods(a81b0293-7689-4037-b133-483203b57b14).html http://europepmc.org/articles/PMC5467808?pdf=render lic_creative-commons 10.1371/journal.pone.0177325 28604805 oai:nhm.openrepository.com:10141/622236 oai:irdb.nii.ac.jp:01076:0002511509 2625734468 uvapub:oai:dare.uva.nl:publications/a81b0293-7689-4037-b133-483203b57b14 oai:doaj.org/article:386cd0841954404d9bba8ec1d657406c oai:services.nod.dans.knaw.nl:Publications/uvapub:oai:dare.uva.nl:publications/a81b0293-7689-4037-b133-483203b57b14 oai:pubmedcentral.nih.gov:5467808 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|openaire____::55045bd2a65019fd8e6741a755395c8c 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c 10|opendoar____::69f357fcc8e6d119f3d95f33cedb5915 10|openaire____::fffd45256148b1de3114788f21179083 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 10|doajarticles::830e55b42c4aaa815c19cfa4f2e5855e 10|openaire____::8ac8380272269217cb09a928c8caa993 10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a 10|openaire____::fdb035c8b3e0540a8d9a561a6c44f4de 10|opendoar____::bc6dc48b743dc5d013b1abaebd2faed2 10|driver______::bee53aa31dc2cbb538c10c2b65fa5824 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357 10|openaire____::806360c771262b4d6770e7cdf04b5c5a General Biochemistry Genetics and Molecular Biology General Agricultural and Biological Sciences General Medicine Research Article Biology and Life Sciences Paleontology Fossils Fossil Calibration Earth Sciences Evolutionary Systematics Taxonomy Computer and Information Sciences Data Management Phylogenetic Analysis Research and Analysis Methods Database and Informatics Methods Bioinformatics Sequence Analysis Sequence Alignment Paleogenetics Marine and Aquatic Sciences Bodies of Water Oceans Marine Fossils geo stat Journal Article https://vocabularies.coar-repositories.org/resource_types/c_6501/ 2017 fttriple https://doi.org/10.1371/journal.pone.0177325 2023-01-22T17:15:57Z Pteropods are a widespread group of holoplanktonic gastropod molluscs and are uniquely suitable for study of long-term evolutionary processes in the open ocean because they are the only living metazoan plankton with a good fossil record. Pteropods have been proposed as bioindicators to monitor the impacts of ocean acidification and in consequence have attracted considerable research interest, however, a robust evolutionary framework for the group is still lacking. Here we reconstruct their phylogenetic relationships and examine the evolutionary history of pteropods based on combined analyses of Cytochrome Oxidase I, 28S, and 18S ribosomal rRNA sequences and a molecular clock calibrated using fossils and the estimated timing of the formation of the Isthmus of Panama. Euthecosomes with uncoiled shells were monophyletic with Creseis as the earliest diverging lineage, estimated at 41–38 million years ago (mya). The coiled euthecosomes (Limacina, Heliconoides, Thielea) were not monophyletic contrary to the accepted morphology-based taxonomy; however, due to their high rate heterogeneity no firm conclusions can be drawn. We found strong support for monophyly of most euthecosome genera, but Clio appeared as a polyphyletic group, and Diacavolinia grouped within Cavolinia, making the latter genus paraphyletic. The highest evolutionary rates were observed in Heliconoides inflatus and Limacina bulimoides for both 28S and 18S partitions. Using a fossil-calibrated phylogeny that sets the first occurrence of coiled euthecosomes at 79–66 mya, we estimate that uncoiled euthecosomes evolved 51–42 mya and that most extant uncoiled genera originated 40–15 mya. These findings are congruent with a molecular clock analysis using the Isthmus of Panama formation as an independent calibration. Although not all phylogenetic relationships could be resolved based on three molecular markers, this study provides a useful resource to study pteropod diversity and provides general insight into the processes that generate and maintain their ... Article in Journal/Newspaper Ocean acidification Unknown PLOS ONE 12 6 e0177325 |