Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of...
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Online Access: | https://doi.org/10.5061/dryad.29fp0 |
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fttriple:oai:gotriple.eu:50|dedup_wf_001::23fc7e81618c13788d69ab0a7bb067b8 2023-05-15T18:04:11+02:00 Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. 2015-01-01 https://doi.org/10.5061/dryad.29fp0 en eng Dryad http://dx.doi.org/10.5061/dryad.29fp0 https://dx.doi.org/10.5061/dryad.29fp0 lic_creative-commons 10.5061/dryad.29fp0 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:90962 oai:easy.dans.knaw.nl:easy-dataset:90962 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 re3data_____::r3d100000044 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c whole genome analysis SNP Rangifer tarandus Conservation genetics and biodiversity reindeer Russia Life sciences medicine and health care archeo geo Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2015 fttriple https://doi.org/10.5061/dryad.29fp0 2023-01-22T17:41:32Z Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. Data_file_Russian_ReindeerWhole-genome analysis of four female samples of Rangifer tarandus inhabiting Russia (Suppl_Bovine_Russian_Reindeer and Suppl_Ovine_Russian_Reindeer): 1-column -Chromosome; 2 column - SNP; 3- column –Control; 4 column-Allele1; 5 column –Allele2; 6 column -Number of homozygous animals1; 7 column -Number of heterozygous animals; 8 column -Number of homozygous animals2; 9 column -Observed heterozygosity; 10 column- Expected heterozygosity; 11-Hardy-Weinberg equilibrium; 12-Number of animals. Dataset Rangifer tarandus Unknown |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
fttriple |
language |
English |
topic |
whole genome analysis SNP Rangifer tarandus Conservation genetics and biodiversity reindeer Russia Life sciences medicine and health care archeo geo |
spellingShingle |
whole genome analysis SNP Rangifer tarandus Conservation genetics and biodiversity reindeer Russia Life sciences medicine and health care archeo geo Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
topic_facet |
whole genome analysis SNP Rangifer tarandus Conservation genetics and biodiversity reindeer Russia Life sciences medicine and health care archeo geo |
description |
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. Data_file_Russian_ReindeerWhole-genome analysis of four female samples of Rangifer tarandus inhabiting Russia (Suppl_Bovine_Russian_Reindeer and Suppl_Ovine_Russian_Reindeer): 1-column -Chromosome; 2 column - SNP; 3- column –Control; 4 column-Allele1; 5 column –Allele2; 6 column -Number of homozygous animals1; 7 column -Number of heterozygous animals; 8 column -Number of homozygous animals2; 9 column -Observed heterozygosity; 10 column- Expected heterozygosity; 11-Hardy-Weinberg equilibrium; 12-Number of animals. |
format |
Dataset |
author |
Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. |
author_facet |
Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. |
author_sort |
Kharzinova, Veronika R. |
title |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_short |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_full |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_fullStr |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_full_unstemmed |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_sort |
data from: a study of applicability of snp chips developed for bovine and ovine species to whole-genome analysis of reindeer rangifer tarandus |
publisher |
Dryad |
publishDate |
2015 |
url |
https://doi.org/10.5061/dryad.29fp0 |
genre |
Rangifer tarandus |
genre_facet |
Rangifer tarandus |
op_source |
10.5061/dryad.29fp0 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:90962 oai:easy.dans.knaw.nl:easy-dataset:90962 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 re3data_____::r3d100000044 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c |
op_relation |
http://dx.doi.org/10.5061/dryad.29fp0 https://dx.doi.org/10.5061/dryad.29fp0 |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5061/dryad.29fp0 |
_version_ |
1766175483071823872 |