Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)

This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phy...

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Published in:ZooKeys
Main Authors: Hemery, Lenaig G., Ameziane, Nadia, Eleaume, Marc
Format: Text
Language:English
Published: Pensoft Publ 2013
Subjects:
geo
Online Access:https://doi.org/10.3897/zookeys.315.5673
https://archimer.ifremer.fr/doc/00296/40758/39749.pdf
https://archimer.ifremer.fr/doc/00296/40758/
id fttriple:oai:gotriple.eu:10670/1.ro9z25
record_format openpolar
spelling fttriple:oai:gotriple.eu:10670/1.ro9z25 2023-05-15T13:24:11+02:00 Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea) Hemery, Lenaig G. Ameziane, Nadia Eleaume, Marc 2013-07-04 https://doi.org/10.3897/zookeys.315.5673 https://archimer.ifremer.fr/doc/00296/40758/39749.pdf https://archimer.ifremer.fr/doc/00296/40758/ en eng Pensoft Publ doi:10.3897/zookeys.315.5673 10670/1.ro9z25 https://archimer.ifremer.fr/doc/00296/40758/39749.pdf https://archimer.ifremer.fr/doc/00296/40758/ lic_creative-commons other Archimer, archive institutionnelle de l'Ifremer Zookeys (1313-2989) (Pensoft Publ), 2013-07-04 , N. 315 , P. 55-64 geo envir Text https://vocabularies.coar-repositories.org/resource_types/c_18cf/ 2013 fttriple https://doi.org/10.3897/zookeys.315.5673 2023-01-22T17:57:43Z This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phylogenetic tools to assess the genetic diversity, demographic history and evolutionary relationships of this very common and abundant comatulid, in the context of the glacial history of the Antarctic and Sub-Antarctic shelves (Thatje et al. 2005, 2008). Over one thousand three hundred specimens (1307) used in this study were collected during seventeen cruises from 1996 to 2010, in eight regions of the Southern Ocean: Kerguelen Plateau, Davis Sea, Dumont d'Urville Sea, Ross Sea, Amundsen Sea, West Antarctic Peninsula, East Weddell Sea and Scotia Arc including the tip of the Antarctic Peninsula and the Bransfield Strait. We give here the metadata of this dataset, which lists sampling sources (cruise ID, ship name, sampling date, sampling gear), sampling sites (station, geographic coordinates, depth) and genetic data (phylogroup, haplotype, sequence ID) for each of the 1307 specimens. The identification of the specimens was controlled by an expert taxonomist specialist of crinoids (Marc Eleaume, Museum national d'Histoire naturelle, Paris) and all the COI sequences were matched against those available on the Barcode of Life Data System (BOLD: http://www.boldsystems.org/index.php/ IDS_OpenIdEngine). This dataset can be used by studies dealing with, among other interests, Antarctic and/or crinoid diversity ( species richness, distribution patterns), biogeography or habitat / ecological niche modeling. This dataset is accessible through the GBIF network at http://ipt.biodiversity.aq/resource.do?r=proke. Text Amundsen Sea Antarc* Antarctic Antarctic Peninsula Bransfield Strait D'Urville Sea Davis Sea Dumont D'Urville Sea Ross Sea Southern Ocean Weddell Sea Unknown Amundsen Sea Antarctic Antarctic Peninsula Bransfield Strait D'Urville Sea ENVELOPE(140.000,140.000,-65.000,-65.000) Davis Sea ENVELOPE(93.500,93.500,-66.000,-66.000) Dumont d'Urville ENVELOPE(140.017,140.017,-66.667,-66.667) Dumont-d'Urville ENVELOPE(140.013,140.013,-66.667,-66.667) Kerguelen Ross Sea Southern Ocean The Antarctic Weddell Weddell Sea ZooKeys 315 55 64
institution Open Polar
collection Unknown
op_collection_id fttriple
language English
topic geo
envir
spellingShingle geo
envir
Hemery, Lenaig G.
Ameziane, Nadia
Eleaume, Marc
Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
topic_facet geo
envir
description This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phylogenetic tools to assess the genetic diversity, demographic history and evolutionary relationships of this very common and abundant comatulid, in the context of the glacial history of the Antarctic and Sub-Antarctic shelves (Thatje et al. 2005, 2008). Over one thousand three hundred specimens (1307) used in this study were collected during seventeen cruises from 1996 to 2010, in eight regions of the Southern Ocean: Kerguelen Plateau, Davis Sea, Dumont d'Urville Sea, Ross Sea, Amundsen Sea, West Antarctic Peninsula, East Weddell Sea and Scotia Arc including the tip of the Antarctic Peninsula and the Bransfield Strait. We give here the metadata of this dataset, which lists sampling sources (cruise ID, ship name, sampling date, sampling gear), sampling sites (station, geographic coordinates, depth) and genetic data (phylogroup, haplotype, sequence ID) for each of the 1307 specimens. The identification of the specimens was controlled by an expert taxonomist specialist of crinoids (Marc Eleaume, Museum national d'Histoire naturelle, Paris) and all the COI sequences were matched against those available on the Barcode of Life Data System (BOLD: http://www.boldsystems.org/index.php/ IDS_OpenIdEngine). This dataset can be used by studies dealing with, among other interests, Antarctic and/or crinoid diversity ( species richness, distribution patterns), biogeography or habitat / ecological niche modeling. This dataset is accessible through the GBIF network at http://ipt.biodiversity.aq/resource.do?r=proke.
format Text
author Hemery, Lenaig G.
Ameziane, Nadia
Eleaume, Marc
author_facet Hemery, Lenaig G.
Ameziane, Nadia
Eleaume, Marc
author_sort Hemery, Lenaig G.
title Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_short Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_full Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_fullStr Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_full_unstemmed Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_sort circumpolar dataset of sequenced specimens of promachocrinus kerguelensis (echinodermata, crinoidea)
publisher Pensoft Publ
publishDate 2013
url https://doi.org/10.3897/zookeys.315.5673
https://archimer.ifremer.fr/doc/00296/40758/39749.pdf
https://archimer.ifremer.fr/doc/00296/40758/
long_lat ENVELOPE(140.000,140.000,-65.000,-65.000)
ENVELOPE(93.500,93.500,-66.000,-66.000)
ENVELOPE(140.017,140.017,-66.667,-66.667)
ENVELOPE(140.013,140.013,-66.667,-66.667)
geographic Amundsen Sea
Antarctic
Antarctic Peninsula
Bransfield Strait
D'Urville Sea
Davis Sea
Dumont d'Urville
Dumont-d'Urville
Kerguelen
Ross Sea
Southern Ocean
The Antarctic
Weddell
Weddell Sea
geographic_facet Amundsen Sea
Antarctic
Antarctic Peninsula
Bransfield Strait
D'Urville Sea
Davis Sea
Dumont d'Urville
Dumont-d'Urville
Kerguelen
Ross Sea
Southern Ocean
The Antarctic
Weddell
Weddell Sea
genre Amundsen Sea
Antarc*
Antarctic
Antarctic Peninsula
Bransfield Strait
D'Urville Sea
Davis Sea
Dumont D'Urville Sea
Ross Sea
Southern Ocean
Weddell Sea
genre_facet Amundsen Sea
Antarc*
Antarctic
Antarctic Peninsula
Bransfield Strait
D'Urville Sea
Davis Sea
Dumont D'Urville Sea
Ross Sea
Southern Ocean
Weddell Sea
op_source Archimer, archive institutionnelle de l'Ifremer
Zookeys (1313-2989) (Pensoft Publ), 2013-07-04 , N. 315 , P. 55-64
op_relation doi:10.3897/zookeys.315.5673
10670/1.ro9z25
https://archimer.ifremer.fr/doc/00296/40758/39749.pdf
https://archimer.ifremer.fr/doc/00296/40758/
op_rights lic_creative-commons
other
op_doi https://doi.org/10.3897/zookeys.315.5673
container_title ZooKeys
container_volume 315
container_start_page 55
op_container_end_page 64
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