Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.

Several strictly anaerobic bacteria that are Gram-stain-positive have the ability to use uric acid as the sole source of carbon and energy. The phylogeny of three such species, Clostridium acidurici, Clostridium purinilyticum, and Eubacterium angustum, members of the Clostridium cluster XII that fer...

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Published in:International Journal of Systematic and Evolutionary Microbiology
Main Authors: Poehlein, Anja, Yutin, Natalya, Daniel, Rolf, Galperin, Michael Y.
Format: Article in Journal/Newspaper
Language:English
Published: 2017
Subjects:
610
Online Access:http://resolver.sub.uni-goettingen.de/purl?gs-1/16881
https://doi.org/10.1099/ijsem.0.002008
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spelling ftsubgoettingen:oai:goescholar:1/16881 2023-05-15T13:30:29+02:00 Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov. Poehlein, Anja Yutin, Natalya Daniel, Rolf Galperin, Michael Y. 2017 http://resolver.sub.uni-goettingen.de/purl?gs-1/16881 https://doi.org/10.1099/ijsem.0.002008 eng eng 1466-5034 1466-5026 http://resolver.sub.uni-goettingen.de/purl?gs-1/16881 doi:10.1099/ijsem.0.002008 28853681 openAccess https://creativecommons.org/licenses/by/4.0/ CC-BY Gottschalkia purinilytica 610 journalArticle publishedVersion 2017 ftsubgoettingen https://doi.org/10.1099/ijsem.0.002008 2022-11-02T09:29:22Z Several strictly anaerobic bacteria that are Gram-stain-positive have the ability to use uric acid as the sole source of carbon and energy. The phylogeny of three such species, Clostridium acidurici, Clostridium purinilyticum, and Eubacterium angustum, members of the Clostridium cluster XII that ferment purines, but not most amino acids or carbohydrates, has been re-examined, taking advantage of their recently sequenced genomes. Phylogenetic analyses, based on 16S rRNA gene sequences, protein sequences of RpoB and GyrB, and on a concatenated alignment of 50 ribosomal proteins, revealed tight clustering of C. acidurici and C. purinilyticum. Eubacterium angustum showed consistent association with C. acidurici and C. purinilyticum , but differed from these two in terms of the genome size, G+C content of its chromosomal DNA and its inability to form spores. We propose reassigning C. acidurici and C. purinilyticum to the novel genus Gottschalkia as Gottschalkia acidurici gen. nov. comb. nov. (the type species of the genus) and Gottschalkia purinilytica comb. nov., respectively. Eubacterium angustum is proposed to be reclassified as Andreesenia angusta gen. nov. comb. nov. Furthermore, based on the phylogenetic data and similar metabolic properties, we propose assigning genera Gottschalkia and Andreesenia to the novel family Gottschalkiaceae. Metagenomic sequencing data indicate the widespread distibution of organisms falling within the radiation of the proposed family Gottschalkiaceae in terrestrial and aquatic habitats from upstate New York to Antarctica, most likely due to their ability to metabolize avian-produced uric acid peerReviewed Article in Journal/Newspaper Antarc* Antarctica Georg-August-Universität Göttingen: GoeScholar International Journal of Systematic and Evolutionary Microbiology 67 8 2711 2719
institution Open Polar
collection Georg-August-Universität Göttingen: GoeScholar
op_collection_id ftsubgoettingen
language English
topic Gottschalkia purinilytica
610
spellingShingle Gottschalkia purinilytica
610
Poehlein, Anja
Yutin, Natalya
Daniel, Rolf
Galperin, Michael Y.
Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.
topic_facet Gottschalkia purinilytica
610
description Several strictly anaerobic bacteria that are Gram-stain-positive have the ability to use uric acid as the sole source of carbon and energy. The phylogeny of three such species, Clostridium acidurici, Clostridium purinilyticum, and Eubacterium angustum, members of the Clostridium cluster XII that ferment purines, but not most amino acids or carbohydrates, has been re-examined, taking advantage of their recently sequenced genomes. Phylogenetic analyses, based on 16S rRNA gene sequences, protein sequences of RpoB and GyrB, and on a concatenated alignment of 50 ribosomal proteins, revealed tight clustering of C. acidurici and C. purinilyticum. Eubacterium angustum showed consistent association with C. acidurici and C. purinilyticum , but differed from these two in terms of the genome size, G+C content of its chromosomal DNA and its inability to form spores. We propose reassigning C. acidurici and C. purinilyticum to the novel genus Gottschalkia as Gottschalkia acidurici gen. nov. comb. nov. (the type species of the genus) and Gottschalkia purinilytica comb. nov., respectively. Eubacterium angustum is proposed to be reclassified as Andreesenia angusta gen. nov. comb. nov. Furthermore, based on the phylogenetic data and similar metabolic properties, we propose assigning genera Gottschalkia and Andreesenia to the novel family Gottschalkiaceae. Metagenomic sequencing data indicate the widespread distibution of organisms falling within the radiation of the proposed family Gottschalkiaceae in terrestrial and aquatic habitats from upstate New York to Antarctica, most likely due to their ability to metabolize avian-produced uric acid peerReviewed
format Article in Journal/Newspaper
author Poehlein, Anja
Yutin, Natalya
Daniel, Rolf
Galperin, Michael Y.
author_facet Poehlein, Anja
Yutin, Natalya
Daniel, Rolf
Galperin, Michael Y.
author_sort Poehlein, Anja
title Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.
title_short Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.
title_full Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.
title_fullStr Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.
title_full_unstemmed Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.
title_sort proposal for the reclassification of obligately purine-fermenting bacteria clostridium acidurici (barker 1938) and clostridium purinilyticum (dürre et al. 1981) as gottschalkia acidurici gen. nov. comb. nov. and gottschalkia purinilytica comb. nov. and of eubacterium angustum (beuscher and andreesen 1985) as andreesenia angusta gen. nov. comb. nov. in the family gottschalkiaceae fam. nov.
publishDate 2017
url http://resolver.sub.uni-goettingen.de/purl?gs-1/16881
https://doi.org/10.1099/ijsem.0.002008
genre Antarc*
Antarctica
genre_facet Antarc*
Antarctica
op_relation 1466-5034
1466-5026
http://resolver.sub.uni-goettingen.de/purl?gs-1/16881
doi:10.1099/ijsem.0.002008
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op_rights openAccess
https://creativecommons.org/licenses/by/4.0/
op_rightsnorm CC-BY
op_doi https://doi.org/10.1099/ijsem.0.002008
container_title International Journal of Systematic and Evolutionary Microbiology
container_volume 67
container_issue 8
container_start_page 2711
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