Testing the usefulness of optical data for zooplankton long‐term monitoring: Taxonomic composition, abundance, biomass, and size spectra from ZooScan image analysis

The pelagic ecosystem of the Arctic Ocean is threatened by severe changes such as the reduction in sea‐ice coverage and increased inflow of warmer Atlantic water. The latter is already altering the zooplankton community, highlighting the need for monitoring studies. It is therefore essential to acce...

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Published in:Limnology and Oceanography: Methods
Main Authors: Cornils, Astrid, Thomisch, Karolin, Hase, Joanna, Hildebrandt, Nicole, Auel, Holger, Niehoff, Barbara, Thomisch, Karolin; 2 Section Physical Oceanography of the Polar Seas, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany, Hase, Joanna; 1 Section Polar Biological Oceanography, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany, Hildebrandt, Nicole; 1 Section Polar Biological Oceanography, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany, Auel, Holger; 3 Universität Bremen, FB02, BreMarE—Bremen Marine Ecology Bremen Germany
Format: Article in Journal/Newspaper
Language:English
Published: John Wiley & Sons, Inc. 2022
Subjects:
Online Access:https://doi.org/10.1002/lom3.10495
http://resolver.sub.uni-goettingen.de/purl?gldocs-11858/10301
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author Cornils, Astrid
Thomisch, Karolin
Hase, Joanna
Hildebrandt, Nicole
Auel, Holger
Niehoff, Barbara
Thomisch, Karolin; 2 Section Physical Oceanography of the Polar Seas, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany
Hase, Joanna; 1 Section Polar Biological Oceanography, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany
Hildebrandt, Nicole; 1 Section Polar Biological Oceanography, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany
Auel, Holger; 3 Universität Bremen, FB02, BreMarE—Bremen Marine Ecology Bremen Germany
author_facet Cornils, Astrid
Thomisch, Karolin
Hase, Joanna
Hildebrandt, Nicole
Auel, Holger
Niehoff, Barbara
Thomisch, Karolin; 2 Section Physical Oceanography of the Polar Seas, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany
Hase, Joanna; 1 Section Polar Biological Oceanography, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany
Hildebrandt, Nicole; 1 Section Polar Biological Oceanography, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany
Auel, Holger; 3 Universität Bremen, FB02, BreMarE—Bremen Marine Ecology Bremen Germany
author_sort Cornils, Astrid
collection GEO-LEOe-docs (FID GEO)
container_issue 7
container_start_page 428
container_title Limnology and Oceanography: Methods
container_volume 20
description The pelagic ecosystem of the Arctic Ocean is threatened by severe changes such as the reduction in sea‐ice coverage and increased inflow of warmer Atlantic water. The latter is already altering the zooplankton community, highlighting the need for monitoring studies. It is therefore essential to accelerate the taxonomic identification to speed up sample analysis, and to expand the analysis to biomass and size assessments, providing data for modeling efforts. Our case study in Fram Strait illustrates that image‐based analyses with the ZooScan provide abundance data and taxonomic resolutions that are comparable to microscopic analyses and are suitable for zooplankton monitoring purposes in the Arctic. We also show that image analysis allows to differentiate developmental stages of the key species Calanus spp. and Metridia longa and, thus, to study their population dynamics. Our results emphasize that older preserved samples can be successfully reanalyzed with ZooScan. To explore the applicability of image parameters for calculating total mesozooplankton and Calanus spp. biomasses, we used (1) conversion factors (CFs) translating wet mass to dry mass (DM), and (2) length–mass (LM) relationships. For Calanus spp., the calculated biomass values yielded similar results as direct DM measurements. Total mesozooplankton biomass ranged between 1.6 and 15 (LM) or 2.4 and 21 (CF) g DM m², respectively, which corresponds to previous studies in Fram Strait. Ultimately, a normalized biomass size spectra analysis provides 1st insights into the mesozooplankton size structure at different depths, revealing steep slopes in the linear fit in communities influenced by Atlantic water inflow. Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
format Article in Journal/Newspaper
genre Arctic
Arctic Ocean
Fram Strait
Sea ice
Zooplankton
genre_facet Arctic
Arctic Ocean
Fram Strait
Sea ice
Zooplankton
geographic Arctic
Arctic Ocean
geographic_facet Arctic
Arctic Ocean
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institution Open Polar
language English
op_collection_id ftsubggeo
op_container_end_page 450
op_doi https://doi.org/10.1002/lom3.10495
op_relation doi:10.1002/lom3.10495
http://resolver.sub.uni-goettingen.de/purl?gldocs-11858/10301
op_rights This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
op_rightsnorm CC-BY
publishDate 2022
publisher John Wiley & Sons, Inc.
record_format openpolar
spelling ftsubggeo:oai:e-docs.geo-leo.de:11858/10301 2025-01-16T20:26:20+00:00 Testing the usefulness of optical data for zooplankton long‐term monitoring: Taxonomic composition, abundance, biomass, and size spectra from ZooScan image analysis Cornils, Astrid Thomisch, Karolin Hase, Joanna Hildebrandt, Nicole Auel, Holger Niehoff, Barbara Thomisch, Karolin; 2 Section Physical Oceanography of the Polar Seas, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany Hase, Joanna; 1 Section Polar Biological Oceanography, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany Hildebrandt, Nicole; 1 Section Polar Biological Oceanography, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany Auel, Holger; 3 Universität Bremen, FB02, BreMarE—Bremen Marine Ecology Bremen Germany 2022-05-28 https://doi.org/10.1002/lom3.10495 http://resolver.sub.uni-goettingen.de/purl?gldocs-11858/10301 eng eng John Wiley & Sons, Inc. Hoboken, USA doi:10.1002/lom3.10495 http://resolver.sub.uni-goettingen.de/purl?gldocs-11858/10301 This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. CC-BY ddc:577.7 Arctic Ocean biomass image analysis ZooScan doc-type:article 2022 ftsubggeo https://doi.org/10.1002/lom3.10495 2022-11-09T06:51:44Z The pelagic ecosystem of the Arctic Ocean is threatened by severe changes such as the reduction in sea‐ice coverage and increased inflow of warmer Atlantic water. The latter is already altering the zooplankton community, highlighting the need for monitoring studies. It is therefore essential to accelerate the taxonomic identification to speed up sample analysis, and to expand the analysis to biomass and size assessments, providing data for modeling efforts. Our case study in Fram Strait illustrates that image‐based analyses with the ZooScan provide abundance data and taxonomic resolutions that are comparable to microscopic analyses and are suitable for zooplankton monitoring purposes in the Arctic. We also show that image analysis allows to differentiate developmental stages of the key species Calanus spp. and Metridia longa and, thus, to study their population dynamics. Our results emphasize that older preserved samples can be successfully reanalyzed with ZooScan. To explore the applicability of image parameters for calculating total mesozooplankton and Calanus spp. biomasses, we used (1) conversion factors (CFs) translating wet mass to dry mass (DM), and (2) length–mass (LM) relationships. For Calanus spp., the calculated biomass values yielded similar results as direct DM measurements. Total mesozooplankton biomass ranged between 1.6 and 15 (LM) or 2.4 and 21 (CF) g DM m², respectively, which corresponds to previous studies in Fram Strait. Ultimately, a normalized biomass size spectra analysis provides 1st insights into the mesozooplankton size structure at different depths, revealing steep slopes in the linear fit in communities influenced by Atlantic water inflow. Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347 Article in Journal/Newspaper Arctic Arctic Ocean Fram Strait Sea ice Zooplankton GEO-LEOe-docs (FID GEO) Arctic Arctic Ocean Limnology and Oceanography: Methods 20 7 428 450
spellingShingle ddc:577.7
Arctic Ocean
biomass
image analysis
ZooScan
Cornils, Astrid
Thomisch, Karolin
Hase, Joanna
Hildebrandt, Nicole
Auel, Holger
Niehoff, Barbara
Thomisch, Karolin; 2 Section Physical Oceanography of the Polar Seas, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany
Hase, Joanna; 1 Section Polar Biological Oceanography, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany
Hildebrandt, Nicole; 1 Section Polar Biological Oceanography, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research Bremerhaven Germany
Auel, Holger; 3 Universität Bremen, FB02, BreMarE—Bremen Marine Ecology Bremen Germany
Testing the usefulness of optical data for zooplankton long‐term monitoring: Taxonomic composition, abundance, biomass, and size spectra from ZooScan image analysis
title Testing the usefulness of optical data for zooplankton long‐term monitoring: Taxonomic composition, abundance, biomass, and size spectra from ZooScan image analysis
title_full Testing the usefulness of optical data for zooplankton long‐term monitoring: Taxonomic composition, abundance, biomass, and size spectra from ZooScan image analysis
title_fullStr Testing the usefulness of optical data for zooplankton long‐term monitoring: Taxonomic composition, abundance, biomass, and size spectra from ZooScan image analysis
title_full_unstemmed Testing the usefulness of optical data for zooplankton long‐term monitoring: Taxonomic composition, abundance, biomass, and size spectra from ZooScan image analysis
title_short Testing the usefulness of optical data for zooplankton long‐term monitoring: Taxonomic composition, abundance, biomass, and size spectra from ZooScan image analysis
title_sort testing the usefulness of optical data for zooplankton long‐term monitoring: taxonomic composition, abundance, biomass, and size spectra from zooscan image analysis
topic ddc:577.7
Arctic Ocean
biomass
image analysis
ZooScan
topic_facet ddc:577.7
Arctic Ocean
biomass
image analysis
ZooScan
url https://doi.org/10.1002/lom3.10495
http://resolver.sub.uni-goettingen.de/purl?gldocs-11858/10301