Validation of the F-POD—a fully automated cetacean monitoring system
The F-POD, an echolocation-click logging device, is commonly used for passive acoustic monitoring of cetaceans. This paper presents the first assessment of the error-rate of fully automated analysis by this system, a description of the F-POD hardware, and a description of the KERNO-F v1.0 classifier...
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ftstandrewserep:oai:research-repository.st-andrews.ac.uk:10023/28823 2024-05-12T08:04:51+00:00 Validation of the F-POD—a fully automated cetacean monitoring system Ivanchikova, Julia Tregenza, Nicholas Paiva, Vitor Hugo Rodrigues University of St Andrews. Scottish Oceans Institute University of St Andrews. School of Biology 2023-12-06T13:30:04Z 21 2215548 application/pdf https://hdl.handle.net/10023/28823 https://doi.org/10.1371/journal.pone.0293402 eng eng PLoS ONE 297084512 cc92c4fc-e4ff-4f38-bcb4-91bcba13238b 85177443753 Ivanchikova , J , Tregenza , N & Paiva , V H R (ed.) 2023 , ' Validation of the F-POD—a fully automated cetacean monitoring system ' , PLoS ONE , vol. 18 , no. 11 , e0293402 . https://doi.org/10.1371/journal.pone.0293402 1932-6203 Jisc: 1477419 publisher-id: pone-d-23-13844 https://hdl.handle.net/10023/28823 doi:10.1371/journal.pone.0293402 QH301 Biology DAS NIS QH301 Journal article 2023 ftstandrewserep https://doi.org/10.1371/journal.pone.0293402 2024-04-17T14:02:43Z The F-POD, an echolocation-click logging device, is commonly used for passive acoustic monitoring of cetaceans. This paper presents the first assessment of the error-rate of fully automated analysis by this system, a description of the F-POD hardware, and a description of the KERNO-F v1.0 classifier which identifies click trains. Since 2020, twenty F-POD loggers have been used in the BlackCeTrends project by research teams from Bulgaria, Georgia, Romania, Türkiye, and Ukraine with the aim of investigating trends of relative abundance in populations of cetaceans of the Black Sea. Acoustic data from this project analysed here comprises 9 billion raw data clicks in total, of which 297 million were classified by KERNO-F as Narrow Band High Frequency (NBHF) clicks (harbour porpoise clicks) and 91 million as dolphin clicks. Such data volumes require a reliable automated system of analysis, which we describe. A total of 16,805 Detection Positive Minutes (DPM) were individually inspected and assessed by a visual check of click train characteristics in each DPM. To assess the overall error rate in each species group we investigated 2,000 DPM classified as having NBHF clicks and 2,000 DPM classified as having dolphin clicks. The fraction of NBHF DPM containing misclassified NBHF trains was less than 0.1% and for dolphins the corresponding error-rate was 0.97%. For both species groups (harbour porpoises and dolphins), these error-rates are acceptable for further study of cetaceans in the Black Sea using the automated classification without further editing of the data. The main sources of errors were 0.17% of boat sonar DPMs misclassified as harbour porpoises, and 0.14% of harbour porpoise DPMs misclassified as dolphins. The potential to estimate the rate at which these sources generate errors makes possible a new predictive approach to overall error estimation. Peer reviewed Article in Journal/Newspaper Harbour porpoise University of St Andrews: Digital Research Repository PLOS ONE 18 11 e0293402 |
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University of St Andrews: Digital Research Repository |
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English |
topic |
QH301 Biology DAS NIS QH301 |
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QH301 Biology DAS NIS QH301 Ivanchikova, Julia Tregenza, Nicholas Validation of the F-POD—a fully automated cetacean monitoring system |
topic_facet |
QH301 Biology DAS NIS QH301 |
description |
The F-POD, an echolocation-click logging device, is commonly used for passive acoustic monitoring of cetaceans. This paper presents the first assessment of the error-rate of fully automated analysis by this system, a description of the F-POD hardware, and a description of the KERNO-F v1.0 classifier which identifies click trains. Since 2020, twenty F-POD loggers have been used in the BlackCeTrends project by research teams from Bulgaria, Georgia, Romania, Türkiye, and Ukraine with the aim of investigating trends of relative abundance in populations of cetaceans of the Black Sea. Acoustic data from this project analysed here comprises 9 billion raw data clicks in total, of which 297 million were classified by KERNO-F as Narrow Band High Frequency (NBHF) clicks (harbour porpoise clicks) and 91 million as dolphin clicks. Such data volumes require a reliable automated system of analysis, which we describe. A total of 16,805 Detection Positive Minutes (DPM) were individually inspected and assessed by a visual check of click train characteristics in each DPM. To assess the overall error rate in each species group we investigated 2,000 DPM classified as having NBHF clicks and 2,000 DPM classified as having dolphin clicks. The fraction of NBHF DPM containing misclassified NBHF trains was less than 0.1% and for dolphins the corresponding error-rate was 0.97%. For both species groups (harbour porpoises and dolphins), these error-rates are acceptable for further study of cetaceans in the Black Sea using the automated classification without further editing of the data. The main sources of errors were 0.17% of boat sonar DPMs misclassified as harbour porpoises, and 0.14% of harbour porpoise DPMs misclassified as dolphins. The potential to estimate the rate at which these sources generate errors makes possible a new predictive approach to overall error estimation. Peer reviewed |
author2 |
Paiva, Vitor Hugo Rodrigues University of St Andrews. Scottish Oceans Institute University of St Andrews. School of Biology |
format |
Article in Journal/Newspaper |
author |
Ivanchikova, Julia Tregenza, Nicholas |
author_facet |
Ivanchikova, Julia Tregenza, Nicholas |
author_sort |
Ivanchikova, Julia |
title |
Validation of the F-POD—a fully automated cetacean monitoring system |
title_short |
Validation of the F-POD—a fully automated cetacean monitoring system |
title_full |
Validation of the F-POD—a fully automated cetacean monitoring system |
title_fullStr |
Validation of the F-POD—a fully automated cetacean monitoring system |
title_full_unstemmed |
Validation of the F-POD—a fully automated cetacean monitoring system |
title_sort |
validation of the f-pod—a fully automated cetacean monitoring system |
publishDate |
2023 |
url |
https://hdl.handle.net/10023/28823 https://doi.org/10.1371/journal.pone.0293402 |
genre |
Harbour porpoise |
genre_facet |
Harbour porpoise |
op_relation |
PLoS ONE 297084512 cc92c4fc-e4ff-4f38-bcb4-91bcba13238b 85177443753 Ivanchikova , J , Tregenza , N & Paiva , V H R (ed.) 2023 , ' Validation of the F-POD—a fully automated cetacean monitoring system ' , PLoS ONE , vol. 18 , no. 11 , e0293402 . https://doi.org/10.1371/journal.pone.0293402 1932-6203 Jisc: 1477419 publisher-id: pone-d-23-13844 https://hdl.handle.net/10023/28823 doi:10.1371/journal.pone.0293402 |
op_doi |
https://doi.org/10.1371/journal.pone.0293402 |
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PLOS ONE |
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18 |
container_issue |
11 |
container_start_page |
e0293402 |
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