Validation of the F-POD—a fully automated cetacean monitoring system

The F-POD, an echolocation-click logging device, is commonly used for passive acoustic monitoring of cetaceans. This paper presents the first assessment of the error-rate of fully automated analysis by this system, a description of the F-POD hardware, and a description of the KERNO-F v1.0 classifier...

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Published in:PLOS ONE
Main Authors: Ivanchikova, Julia, Tregenza, Nicholas
Other Authors: Paiva, Vitor Hugo Rodrigues, University of St Andrews. Scottish Oceans Institute, University of St Andrews. School of Biology
Format: Article in Journal/Newspaper
Language:English
Published: 2023
Subjects:
DAS
NIS
Online Access:https://hdl.handle.net/10023/28823
https://doi.org/10.1371/journal.pone.0293402
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spelling ftstandrewserep:oai:research-repository.st-andrews.ac.uk:10023/28823 2024-05-12T08:04:51+00:00 Validation of the F-POD—a fully automated cetacean monitoring system Ivanchikova, Julia Tregenza, Nicholas Paiva, Vitor Hugo Rodrigues University of St Andrews. Scottish Oceans Institute University of St Andrews. School of Biology 2023-12-06T13:30:04Z 21 2215548 application/pdf https://hdl.handle.net/10023/28823 https://doi.org/10.1371/journal.pone.0293402 eng eng PLoS ONE 297084512 cc92c4fc-e4ff-4f38-bcb4-91bcba13238b 85177443753 Ivanchikova , J , Tregenza , N & Paiva , V H R (ed.) 2023 , ' Validation of the F-POD—a fully automated cetacean monitoring system ' , PLoS ONE , vol. 18 , no. 11 , e0293402 . https://doi.org/10.1371/journal.pone.0293402 1932-6203 Jisc: 1477419 publisher-id: pone-d-23-13844 https://hdl.handle.net/10023/28823 doi:10.1371/journal.pone.0293402 QH301 Biology DAS NIS QH301 Journal article 2023 ftstandrewserep https://doi.org/10.1371/journal.pone.0293402 2024-04-17T14:02:43Z The F-POD, an echolocation-click logging device, is commonly used for passive acoustic monitoring of cetaceans. This paper presents the first assessment of the error-rate of fully automated analysis by this system, a description of the F-POD hardware, and a description of the KERNO-F v1.0 classifier which identifies click trains. Since 2020, twenty F-POD loggers have been used in the BlackCeTrends project by research teams from Bulgaria, Georgia, Romania, Türkiye, and Ukraine with the aim of investigating trends of relative abundance in populations of cetaceans of the Black Sea. Acoustic data from this project analysed here comprises 9 billion raw data clicks in total, of which 297 million were classified by KERNO-F as Narrow Band High Frequency (NBHF) clicks (harbour porpoise clicks) and 91 million as dolphin clicks. Such data volumes require a reliable automated system of analysis, which we describe. A total of 16,805 Detection Positive Minutes (DPM) were individually inspected and assessed by a visual check of click train characteristics in each DPM. To assess the overall error rate in each species group we investigated 2,000 DPM classified as having NBHF clicks and 2,000 DPM classified as having dolphin clicks. The fraction of NBHF DPM containing misclassified NBHF trains was less than 0.1% and for dolphins the corresponding error-rate was 0.97%. For both species groups (harbour porpoises and dolphins), these error-rates are acceptable for further study of cetaceans in the Black Sea using the automated classification without further editing of the data. The main sources of errors were 0.17% of boat sonar DPMs misclassified as harbour porpoises, and 0.14% of harbour porpoise DPMs misclassified as dolphins. The potential to estimate the rate at which these sources generate errors makes possible a new predictive approach to overall error estimation. Peer reviewed Article in Journal/Newspaper Harbour porpoise University of St Andrews: Digital Research Repository PLOS ONE 18 11 e0293402
institution Open Polar
collection University of St Andrews: Digital Research Repository
op_collection_id ftstandrewserep
language English
topic QH301 Biology
DAS
NIS
QH301
spellingShingle QH301 Biology
DAS
NIS
QH301
Ivanchikova, Julia
Tregenza, Nicholas
Validation of the F-POD—a fully automated cetacean monitoring system
topic_facet QH301 Biology
DAS
NIS
QH301
description The F-POD, an echolocation-click logging device, is commonly used for passive acoustic monitoring of cetaceans. This paper presents the first assessment of the error-rate of fully automated analysis by this system, a description of the F-POD hardware, and a description of the KERNO-F v1.0 classifier which identifies click trains. Since 2020, twenty F-POD loggers have been used in the BlackCeTrends project by research teams from Bulgaria, Georgia, Romania, Türkiye, and Ukraine with the aim of investigating trends of relative abundance in populations of cetaceans of the Black Sea. Acoustic data from this project analysed here comprises 9 billion raw data clicks in total, of which 297 million were classified by KERNO-F as Narrow Band High Frequency (NBHF) clicks (harbour porpoise clicks) and 91 million as dolphin clicks. Such data volumes require a reliable automated system of analysis, which we describe. A total of 16,805 Detection Positive Minutes (DPM) were individually inspected and assessed by a visual check of click train characteristics in each DPM. To assess the overall error rate in each species group we investigated 2,000 DPM classified as having NBHF clicks and 2,000 DPM classified as having dolphin clicks. The fraction of NBHF DPM containing misclassified NBHF trains was less than 0.1% and for dolphins the corresponding error-rate was 0.97%. For both species groups (harbour porpoises and dolphins), these error-rates are acceptable for further study of cetaceans in the Black Sea using the automated classification without further editing of the data. The main sources of errors were 0.17% of boat sonar DPMs misclassified as harbour porpoises, and 0.14% of harbour porpoise DPMs misclassified as dolphins. The potential to estimate the rate at which these sources generate errors makes possible a new predictive approach to overall error estimation. Peer reviewed
author2 Paiva, Vitor Hugo Rodrigues
University of St Andrews. Scottish Oceans Institute
University of St Andrews. School of Biology
format Article in Journal/Newspaper
author Ivanchikova, Julia
Tregenza, Nicholas
author_facet Ivanchikova, Julia
Tregenza, Nicholas
author_sort Ivanchikova, Julia
title Validation of the F-POD—a fully automated cetacean monitoring system
title_short Validation of the F-POD—a fully automated cetacean monitoring system
title_full Validation of the F-POD—a fully automated cetacean monitoring system
title_fullStr Validation of the F-POD—a fully automated cetacean monitoring system
title_full_unstemmed Validation of the F-POD—a fully automated cetacean monitoring system
title_sort validation of the f-pod—a fully automated cetacean monitoring system
publishDate 2023
url https://hdl.handle.net/10023/28823
https://doi.org/10.1371/journal.pone.0293402
genre Harbour porpoise
genre_facet Harbour porpoise
op_relation PLoS ONE
297084512
cc92c4fc-e4ff-4f38-bcb4-91bcba13238b
85177443753
Ivanchikova , J , Tregenza , N & Paiva , V H R (ed.) 2023 , ' Validation of the F-POD—a fully automated cetacean monitoring system ' , PLoS ONE , vol. 18 , no. 11 , e0293402 . https://doi.org/10.1371/journal.pone.0293402
1932-6203
Jisc: 1477419
publisher-id: pone-d-23-13844
https://hdl.handle.net/10023/28823
doi:10.1371/journal.pone.0293402
op_doi https://doi.org/10.1371/journal.pone.0293402
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