Guidelines for genetic data analysis
The IWC Scientific Committee recently adopted guidelines for quality control of DNA data. Once data have been collected, the next step is to analyse the data and make inferences that are useful for addressing practical problems in conservation and management of cetaceans. This is a complex exercise,...
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ftstandrewserep:oai:research-repository.st-andrews.ac.uk:10023/19530 2023-07-02T03:32:32+02:00 Guidelines for genetic data analysis Waples, Robin S. Rus Hoelzel, A. Gaggiotti, Oscar Tiedemann, Ralph Palsbøll, Per J. Cipriano, Frank Jackson, Jennifer Bickham, John W. Lang, Aimée R. University of St Andrews. School of Biology University of St Andrews. Scottish Oceans Institute University of St Andrews. Marine Alliance for Science & Technology Scotland 2020-02-25T16:30:07Z 48 application/pdf http://hdl.handle.net/10023/19530 https://archive.iwc.int/?r=7069 eng eng Journal of Cetacean Research and Management Waples , R S , Rus Hoelzel , A , Gaggiotti , O , Tiedemann , R , Palsbøll , P J , Cipriano , F , Jackson , J , Bickham , J W & Lang , A R 2018 , ' Guidelines for genetic data analysis ' , Journal of Cetacean Research and Management , vol. 18 , pp. 33-80 . < https://archive.iwc.int/?r=7069 > 1561-0713 PURE: 266432121 PURE UUID: d70bdf4a-a33b-49a5-9a40-a7521bc53086 Scopus: 85069548210 ORCID: /0000-0003-1827-1493/work/69463392 http://hdl.handle.net/10023/19530 https://archive.iwc.int/?r=7069 Copyright © 2018 the Author(s). This work has been made available online in accordance with publisher policies or with permission. Permission for further reuse of this content should be sought from the publisher or the rights holder. This is the final published version of the work, which was originally published at https://archive.iwc.int/?r=7069. Abundance estimate Breeding grounds Conservation DNA fingerprinting Feeding grounds Genetics Humpback whale Migration Minke whale Reproduction Taxonomy GC Oceanography QA75 Electronic computers. Computer science QH426 Genetics Animal Science and Zoology Aquatic Science Ecology Evolution Behavior and Systematics T-NDAS GC QA75 QH426 Journal article 2020 ftstandrewserep 2023-06-13T18:26:41Z The IWC Scientific Committee recently adopted guidelines for quality control of DNA data. Once data have been collected, the next step is to analyse the data and make inferences that are useful for addressing practical problems in conservation and management of cetaceans. This is a complex exercise, as numerous analyses are possible and users have a wide range of choices of software programs for implementing the analyses. This paper reviews the underlying issues, illustrates application of different types of genetic data analysis to two complex management problems (involving common minke whales and humpback whales), and concludes with a number of recommendations for best practices in the analysis of population genetic data. An extensive Appendix provides a detailed review and critique of most types of analyses that are used with population genetic data for cetaceans. Publisher PDF Peer reviewed Article in Journal/Newspaper Humpback Whale minke whale University of St Andrews: Digital Research Repository |
institution |
Open Polar |
collection |
University of St Andrews: Digital Research Repository |
op_collection_id |
ftstandrewserep |
language |
English |
topic |
Abundance estimate Breeding grounds Conservation DNA fingerprinting Feeding grounds Genetics Humpback whale Migration Minke whale Reproduction Taxonomy GC Oceanography QA75 Electronic computers. Computer science QH426 Genetics Animal Science and Zoology Aquatic Science Ecology Evolution Behavior and Systematics T-NDAS GC QA75 QH426 |
spellingShingle |
Abundance estimate Breeding grounds Conservation DNA fingerprinting Feeding grounds Genetics Humpback whale Migration Minke whale Reproduction Taxonomy GC Oceanography QA75 Electronic computers. Computer science QH426 Genetics Animal Science and Zoology Aquatic Science Ecology Evolution Behavior and Systematics T-NDAS GC QA75 QH426 Waples, Robin S. Rus Hoelzel, A. Gaggiotti, Oscar Tiedemann, Ralph Palsbøll, Per J. Cipriano, Frank Jackson, Jennifer Bickham, John W. Lang, Aimée R. Guidelines for genetic data analysis |
topic_facet |
Abundance estimate Breeding grounds Conservation DNA fingerprinting Feeding grounds Genetics Humpback whale Migration Minke whale Reproduction Taxonomy GC Oceanography QA75 Electronic computers. Computer science QH426 Genetics Animal Science and Zoology Aquatic Science Ecology Evolution Behavior and Systematics T-NDAS GC QA75 QH426 |
description |
The IWC Scientific Committee recently adopted guidelines for quality control of DNA data. Once data have been collected, the next step is to analyse the data and make inferences that are useful for addressing practical problems in conservation and management of cetaceans. This is a complex exercise, as numerous analyses are possible and users have a wide range of choices of software programs for implementing the analyses. This paper reviews the underlying issues, illustrates application of different types of genetic data analysis to two complex management problems (involving common minke whales and humpback whales), and concludes with a number of recommendations for best practices in the analysis of population genetic data. An extensive Appendix provides a detailed review and critique of most types of analyses that are used with population genetic data for cetaceans. Publisher PDF Peer reviewed |
author2 |
University of St Andrews. School of Biology University of St Andrews. Scottish Oceans Institute University of St Andrews. Marine Alliance for Science & Technology Scotland |
format |
Article in Journal/Newspaper |
author |
Waples, Robin S. Rus Hoelzel, A. Gaggiotti, Oscar Tiedemann, Ralph Palsbøll, Per J. Cipriano, Frank Jackson, Jennifer Bickham, John W. Lang, Aimée R. |
author_facet |
Waples, Robin S. Rus Hoelzel, A. Gaggiotti, Oscar Tiedemann, Ralph Palsbøll, Per J. Cipriano, Frank Jackson, Jennifer Bickham, John W. Lang, Aimée R. |
author_sort |
Waples, Robin S. |
title |
Guidelines for genetic data analysis |
title_short |
Guidelines for genetic data analysis |
title_full |
Guidelines for genetic data analysis |
title_fullStr |
Guidelines for genetic data analysis |
title_full_unstemmed |
Guidelines for genetic data analysis |
title_sort |
guidelines for genetic data analysis |
publishDate |
2020 |
url |
http://hdl.handle.net/10023/19530 https://archive.iwc.int/?r=7069 |
genre |
Humpback Whale minke whale |
genre_facet |
Humpback Whale minke whale |
op_relation |
Journal of Cetacean Research and Management Waples , R S , Rus Hoelzel , A , Gaggiotti , O , Tiedemann , R , Palsbøll , P J , Cipriano , F , Jackson , J , Bickham , J W & Lang , A R 2018 , ' Guidelines for genetic data analysis ' , Journal of Cetacean Research and Management , vol. 18 , pp. 33-80 . < https://archive.iwc.int/?r=7069 > 1561-0713 PURE: 266432121 PURE UUID: d70bdf4a-a33b-49a5-9a40-a7521bc53086 Scopus: 85069548210 ORCID: /0000-0003-1827-1493/work/69463392 http://hdl.handle.net/10023/19530 https://archive.iwc.int/?r=7069 |
op_rights |
Copyright © 2018 the Author(s). This work has been made available online in accordance with publisher policies or with permission. Permission for further reuse of this content should be sought from the publisher or the rights holder. This is the final published version of the work, which was originally published at https://archive.iwc.int/?r=7069. |
_version_ |
1770272126923702272 |