FragSAD : a database of diversity and species abundance distributions from habitat fragments
Habitat destruction is the single greatest anthropogenic threat to biodiversity. Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or...
Published in: | Ecology |
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Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Other Authors: | , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
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2019
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Online Access: | http://hdl.handle.net/10023/19160 https://doi.org/10.1002/ecy.2861 http://usir.salford.ac.uk/id/eprint/51975 |
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ftstandrewserep:oai:research-repository.st-andrews.ac.uk:10023/19160 |
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record_format |
openpolar |
institution |
Open Polar |
collection |
University of St Andrews: Digital Research Repository |
op_collection_id |
ftstandrewserep |
language |
English |
topic |
Disturbance Habitat fragmentation Habitat loss Species abundance distribution Species richness Species–area relationship QH301 Biology ZA4050 Electronic information resources Ecology Evolution Behavior and Systematics DAS QH301 ZA4050 |
spellingShingle |
Disturbance Habitat fragmentation Habitat loss Species abundance distribution Species richness Species–area relationship QH301 Biology ZA4050 Electronic information resources Ecology Evolution Behavior and Systematics DAS QH301 ZA4050 Chase, Jonathan M. Liebergesell, Mario Sagouis, Alban May, Felix Blowes, Shane A. Berg, Åke Bernard, Enrico Brosi, Berry J. Cadotte, Marc W. Cayuela, Luis Chiarello, Adriano G. Cosson, Jean Francois Cresswell, Will Dami, Filibus Danjuma Dauber, Jens Dickman, Chris R. Didham, Raphael K. Edwards, David P. Farneda, Fábio Z. Gavish, Yoni Gonçalves-Souza, Thiago Guadagnin, Demetrio Luis Henry, Mickaël López-Baucells, Adrià Kappes, Heike Mac Nally, Ralph Manu, Shiiwua Martensen, Alexandre Camargo McCollin, Duncan Meyer, Christoph F.J. Neckel-Oliveira, Selvino Nogueira, André Pons, Jean-Marc Raheem, Dinarzarde C. Ramos, Flavio Nunes Rocha, Ricardo Sam, Katerina Slade, Eleanor Stireman, John O. Struebig, Matthew J. Vasconcelos, Heraldo Ziv, Yaron FragSAD : a database of diversity and species abundance distributions from habitat fragments |
topic_facet |
Disturbance Habitat fragmentation Habitat loss Species abundance distribution Species richness Species–area relationship QH301 Biology ZA4050 Electronic information resources Ecology Evolution Behavior and Systematics DAS QH301 ZA4050 |
description |
Habitat destruction is the single greatest anthropogenic threat to biodiversity. Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or consensus has been achieved, primarily because of non-standardized sampling methodology and analyses of notoriously scale-dependent response variables (i.e., species richness). To be able to compare and contrast the results of habitat fragmentation on species’ assemblages, it is necessary to have the underlying data on species abundances and sampling intensity, so that standardization can be achieved. To accomplish this, we systematically searched the literature for studies where abundances of species in assemblages (of any taxa) were sampled from many habitat patches that varied in size. From these, we extracted data from several studies, and contacted authors of studies where appropriate data were collected but not published, giving us 117 studies that compared species assemblages among habitat fragments that varied in area. Less than one-half (41) of studies came from tropical forests of Central and South America, but there were many studies from temperate forests and grasslands from all continents except Antarctica. Fifty-four of the studies were on invertebrates (mostly insects), but there were several studies on plants (15), birds (16), mammals (19), and reptiles and amphibians (13). We also collected qualitative information on the length of time since fragmentation. With data on total and relative abundances (and identities) of species, sampling effort, and affiliated meta-data about the study sites, these data can be used to more definitively test hypotheses about the role of habitat fragmentation in altering patterns of biodiversity. There are no copyright restrictions. Please cite this data paper and the associated Dryad data set if the data are used in publications. Publisher PDF Peer reviewed |
author2 |
University of St Andrews. School of Biology University of St Andrews. Centre for Biological Diversity University of St Andrews. Scottish Oceans Institute University of St Andrews. Institute of Behavioural and Neural Sciences University of St Andrews. St Andrews Sustainability Institute |
format |
Article in Journal/Newspaper |
author |
Chase, Jonathan M. Liebergesell, Mario Sagouis, Alban May, Felix Blowes, Shane A. Berg, Åke Bernard, Enrico Brosi, Berry J. Cadotte, Marc W. Cayuela, Luis Chiarello, Adriano G. Cosson, Jean Francois Cresswell, Will Dami, Filibus Danjuma Dauber, Jens Dickman, Chris R. Didham, Raphael K. Edwards, David P. Farneda, Fábio Z. Gavish, Yoni Gonçalves-Souza, Thiago Guadagnin, Demetrio Luis Henry, Mickaël López-Baucells, Adrià Kappes, Heike Mac Nally, Ralph Manu, Shiiwua Martensen, Alexandre Camargo McCollin, Duncan Meyer, Christoph F.J. Neckel-Oliveira, Selvino Nogueira, André Pons, Jean-Marc Raheem, Dinarzarde C. Ramos, Flavio Nunes Rocha, Ricardo Sam, Katerina Slade, Eleanor Stireman, John O. Struebig, Matthew J. Vasconcelos, Heraldo Ziv, Yaron |
author_facet |
Chase, Jonathan M. Liebergesell, Mario Sagouis, Alban May, Felix Blowes, Shane A. Berg, Åke Bernard, Enrico Brosi, Berry J. Cadotte, Marc W. Cayuela, Luis Chiarello, Adriano G. Cosson, Jean Francois Cresswell, Will Dami, Filibus Danjuma Dauber, Jens Dickman, Chris R. Didham, Raphael K. Edwards, David P. Farneda, Fábio Z. Gavish, Yoni Gonçalves-Souza, Thiago Guadagnin, Demetrio Luis Henry, Mickaël López-Baucells, Adrià Kappes, Heike Mac Nally, Ralph Manu, Shiiwua Martensen, Alexandre Camargo McCollin, Duncan Meyer, Christoph F.J. Neckel-Oliveira, Selvino Nogueira, André Pons, Jean-Marc Raheem, Dinarzarde C. Ramos, Flavio Nunes Rocha, Ricardo Sam, Katerina Slade, Eleanor Stireman, John O. Struebig, Matthew J. Vasconcelos, Heraldo Ziv, Yaron |
author_sort |
Chase, Jonathan M. |
title |
FragSAD : a database of diversity and species abundance distributions from habitat fragments |
title_short |
FragSAD : a database of diversity and species abundance distributions from habitat fragments |
title_full |
FragSAD : a database of diversity and species abundance distributions from habitat fragments |
title_fullStr |
FragSAD : a database of diversity and species abundance distributions from habitat fragments |
title_full_unstemmed |
FragSAD : a database of diversity and species abundance distributions from habitat fragments |
title_sort |
fragsad : a database of diversity and species abundance distributions from habitat fragments |
publishDate |
2019 |
url |
http://hdl.handle.net/10023/19160 https://doi.org/10.1002/ecy.2861 http://usir.salford.ac.uk/id/eprint/51975 |
genre |
Antarc* Antarctica |
genre_facet |
Antarc* Antarctica |
op_relation |
Ecology Chase , J M , Liebergesell , M , Sagouis , A , May , F , Blowes , S A , Berg , Å , Bernard , E , Brosi , B J , Cadotte , M W , Cayuela , L , Chiarello , A G , Cosson , J F , Cresswell , W , Dami , F D , Dauber , J , Dickman , C R , Didham , R K , Edwards , D P , Farneda , F Z , Gavish , Y , Gonçalves-Souza , T , Guadagnin , D L , Henry , M , López-Baucells , A , Kappes , H , Mac Nally , R , Manu , S , Martensen , A C , McCollin , D , Meyer , C F J , Neckel-Oliveira , S , Nogueira , A , Pons , J-M , Raheem , D C , Ramos , F N , Rocha , R , Sam , K , Slade , E , Stireman , J O , Struebig , M J , Vasconcelos , H & Ziv , Y 2019 , ' FragSAD : a database of diversity and species abundance distributions from habitat fragments ' , Ecology , vol. 100 , no. 12 , e02861 . https://doi.org/10.1002/ecy.2861 0012-9658 PURE: 264571927 PURE UUID: eceb8d91-336e-4812-8efc-694d22489b78 Scopus: 85073940998 PubMed: 31380568 ORCID: /0000-0002-4684-7624/work/66398330 WOS: 000488690700001 http://hdl.handle.net/10023/19160 https://doi.org/10.1002/ecy.2861 http://usir.salford.ac.uk/id/eprint/51975 |
op_rights |
Copyright © 2019 the Author(s). © 2019 The Ecological Society of America. This work has been made available online in accordance with publisher policies or with permission. Permission for further reuse of this content should be sought from the publisher or the rights holder. This is the author created accepted manuscript following peer review and may differ slightly from the final published version. The final published version of this work is available at https://doi.org/10.1002/ecy.2861 |
op_doi |
https://doi.org/10.1002/ecy.2861 |
container_title |
Ecology |
container_volume |
100 |
container_issue |
12 |
_version_ |
1770274898488328192 |
spelling |
ftstandrewserep:oai:research-repository.st-andrews.ac.uk:10023/19160 2023-07-02T03:30:40+02:00 FragSAD : a database of diversity and species abundance distributions from habitat fragments Chase, Jonathan M. Liebergesell, Mario Sagouis, Alban May, Felix Blowes, Shane A. Berg, Åke Bernard, Enrico Brosi, Berry J. Cadotte, Marc W. Cayuela, Luis Chiarello, Adriano G. Cosson, Jean Francois Cresswell, Will Dami, Filibus Danjuma Dauber, Jens Dickman, Chris R. Didham, Raphael K. Edwards, David P. Farneda, Fábio Z. Gavish, Yoni Gonçalves-Souza, Thiago Guadagnin, Demetrio Luis Henry, Mickaël López-Baucells, Adrià Kappes, Heike Mac Nally, Ralph Manu, Shiiwua Martensen, Alexandre Camargo McCollin, Duncan Meyer, Christoph F.J. Neckel-Oliveira, Selvino Nogueira, André Pons, Jean-Marc Raheem, Dinarzarde C. Ramos, Flavio Nunes Rocha, Ricardo Sam, Katerina Slade, Eleanor Stireman, John O. Struebig, Matthew J. Vasconcelos, Heraldo Ziv, Yaron University of St Andrews. School of Biology University of St Andrews. Centre for Biological Diversity University of St Andrews. Scottish Oceans Institute University of St Andrews. Institute of Behavioural and Neural Sciences University of St Andrews. St Andrews Sustainability Institute 2019-12-18T15:30:10Z 1 application/pdf http://hdl.handle.net/10023/19160 https://doi.org/10.1002/ecy.2861 http://usir.salford.ac.uk/id/eprint/51975 eng eng Ecology Chase , J M , Liebergesell , M , Sagouis , A , May , F , Blowes , S A , Berg , Å , Bernard , E , Brosi , B J , Cadotte , M W , Cayuela , L , Chiarello , A G , Cosson , J F , Cresswell , W , Dami , F D , Dauber , J , Dickman , C R , Didham , R K , Edwards , D P , Farneda , F Z , Gavish , Y , Gonçalves-Souza , T , Guadagnin , D L , Henry , M , López-Baucells , A , Kappes , H , Mac Nally , R , Manu , S , Martensen , A C , McCollin , D , Meyer , C F J , Neckel-Oliveira , S , Nogueira , A , Pons , J-M , Raheem , D C , Ramos , F N , Rocha , R , Sam , K , Slade , E , Stireman , J O , Struebig , M J , Vasconcelos , H & Ziv , Y 2019 , ' FragSAD : a database of diversity and species abundance distributions from habitat fragments ' , Ecology , vol. 100 , no. 12 , e02861 . https://doi.org/10.1002/ecy.2861 0012-9658 PURE: 264571927 PURE UUID: eceb8d91-336e-4812-8efc-694d22489b78 Scopus: 85073940998 PubMed: 31380568 ORCID: /0000-0002-4684-7624/work/66398330 WOS: 000488690700001 http://hdl.handle.net/10023/19160 https://doi.org/10.1002/ecy.2861 http://usir.salford.ac.uk/id/eprint/51975 Copyright © 2019 the Author(s). © 2019 The Ecological Society of America. This work has been made available online in accordance with publisher policies or with permission. Permission for further reuse of this content should be sought from the publisher or the rights holder. This is the author created accepted manuscript following peer review and may differ slightly from the final published version. The final published version of this work is available at https://doi.org/10.1002/ecy.2861 Disturbance Habitat fragmentation Habitat loss Species abundance distribution Species richness Species–area relationship QH301 Biology ZA4050 Electronic information resources Ecology Evolution Behavior and Systematics DAS QH301 ZA4050 Journal article 2019 ftstandrewserep https://doi.org/10.1002/ecy.2861 2023-06-13T18:27:41Z Habitat destruction is the single greatest anthropogenic threat to biodiversity. Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or consensus has been achieved, primarily because of non-standardized sampling methodology and analyses of notoriously scale-dependent response variables (i.e., species richness). To be able to compare and contrast the results of habitat fragmentation on species’ assemblages, it is necessary to have the underlying data on species abundances and sampling intensity, so that standardization can be achieved. To accomplish this, we systematically searched the literature for studies where abundances of species in assemblages (of any taxa) were sampled from many habitat patches that varied in size. From these, we extracted data from several studies, and contacted authors of studies where appropriate data were collected but not published, giving us 117 studies that compared species assemblages among habitat fragments that varied in area. Less than one-half (41) of studies came from tropical forests of Central and South America, but there were many studies from temperate forests and grasslands from all continents except Antarctica. Fifty-four of the studies were on invertebrates (mostly insects), but there were several studies on plants (15), birds (16), mammals (19), and reptiles and amphibians (13). We also collected qualitative information on the length of time since fragmentation. With data on total and relative abundances (and identities) of species, sampling effort, and affiliated meta-data about the study sites, these data can be used to more definitively test hypotheses about the role of habitat fragmentation in altering patterns of biodiversity. There are no copyright restrictions. Please cite this data paper and the associated Dryad data set if the data are used in publications. Publisher PDF Peer reviewed Article in Journal/Newspaper Antarc* Antarctica University of St Andrews: Digital Research Repository Ecology 100 12 |