Automated peak detection method for behavioral event identification : detecting Balaenoptera musculus and Grampus griseus feeding attempts

This project was supported by the U.S. Office of Naval Research (Grant No. N00014-16-1-3089). Tag deployments used here from the SOCAL-Behavioral Response Study were funded by the U.S. Office of Naval Research and Navy Living Marine Resources under multiple grants and contracts. Further funding was...

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Published in:Animal Biotelemetry
Main Authors: Sweeney, David A., Deruiter, Stacy L., McNamara-Oh, Ye Joo, Marques, Tiago A., Arranz, Patricia, Calambokidis, John
Other Authors: Office of Naval Research, University of St Andrews. School of Mathematics and Statistics, University of St Andrews. Scottish Oceans Institute, University of St Andrews. Centre for Research into Ecological & Environmental Modelling
Format: Article in Journal/Newspaper
Language:English
Published: 2019
Subjects:
DAS
Online Access:http://hdl.handle.net/10023/17477
https://doi.org/10.1186/s40317-019-0169-3
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spelling ftstandrewserep:oai:research-repository.st-andrews.ac.uk:10023/17477 2023-07-02T03:31:45+02:00 Automated peak detection method for behavioral event identification : detecting Balaenoptera musculus and Grampus griseus feeding attempts Sweeney, David A. Deruiter, Stacy L. McNamara-Oh, Ye Joo Marques, Tiago A. Arranz, Patricia Calambokidis, John Office of Naval Research University of St Andrews. School of Mathematics and Statistics University of St Andrews. Scottish Oceans Institute University of St Andrews. Centre for Research into Ecological & Environmental Modelling 2019-04-08T10:30:01Z 10 application/pdf http://hdl.handle.net/10023/17477 https://doi.org/10.1186/s40317-019-0169-3 eng eng Animal Biotelemetry Sweeney , D A , Deruiter , S L , McNamara-Oh , Y J , Marques , T A , Arranz , P & Calambokidis , J 2019 , ' Automated peak detection method for behavioral event identification : detecting Balaenoptera musculus and Grampus griseus feeding attempts ' , Animal Biotelemetry , vol. 7 , 7 . https://doi.org/10.1186/s40317-019-0169-3 2050-3385 PURE: 258517854 PURE UUID: 2264f32e-c484-44e3-a852-22de8858bd84 RIS: urn:9EFDBE33155731F0FAE15B2EFFAE89F5 RIS: Sweeney2019 ORCID: /0000-0002-2581-1972/work/56861262 Scopus: 85063946899 WOS: 000696381300001 http://hdl.handle.net/10023/17477 https://doi.org/10.1186/s40317-019-0169-3 n00014-16-1-3089 Copyright © The Author(s) 2019. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Blue whale Detection Lunge Norm-jerk Prey capture Risso's dolphin QH301 Biology Signal Processing Animal Science and Zoology Instrumentation Computer Networks and Communications DAS QH301 Journal article 2019 ftstandrewserep https://doi.org/10.1186/s40317-019-0169-3 2023-06-13T18:28:14Z This project was supported by the U.S. Office of Naval Research (Grant No. N00014-16-1-3089). Tag deployments used here from the SOCAL-Behavioral Response Study were funded by the U.S. Office of Naval Research and Navy Living Marine Resources under multiple grants and contracts. Further funding was provided by the Kuipers Research Fellowship and the Calvin Alumni Association. TAM thanks partial support by CEAUL (funded by FCT—Fundação para a Ciência e a Tecnologia, Portugal, through the project UID/MAT/00006/2013). The desire of animal behaviorists for more flexible methods of conducting inter-study and inter-specific comparisons and meta-analysis of various animal behaviors compelled us to design an automated, animal behavior peak detection method that is potentially generalizable to a wide variety of data types, animals, and behaviors. We detected the times of feeding attempts by 12 Risso’s dolphins (Grampus griseus) and 36 blue whales (Balaenoptera musculus) using the norm-jerk (rate of change of acceleration) time series. The automated peak detection algorithm identified median true-positive rates of 0.881 for blue whale lunges and 0.410 for Risso’s dolphin prey capture attempts, with median false-positive rates of 0.096 and 0.007 and median miss rates of 0.113 and 0.314, respectively. Our study demonstrates that our peak detection method is efficient at automatically detecting animal behaviors from multisensor tag data with high accuracy for behaviors that are appropriately characterized by the data time series. Publisher PDF Peer reviewed Article in Journal/Newspaper Balaenoptera musculus Blue whale University of St Andrews: Digital Research Repository Calvin ENVELOPE(165.100,165.100,-71.283,-71.283) Kuipers ENVELOPE(161.400,161.400,-77.900,-77.900) Animal Biotelemetry 7 1
institution Open Polar
collection University of St Andrews: Digital Research Repository
op_collection_id ftstandrewserep
language English
topic Blue whale
Detection
Lunge
Norm-jerk
Prey capture
Risso's dolphin
QH301 Biology
Signal Processing
Animal Science and Zoology
Instrumentation
Computer Networks and Communications
DAS
QH301
spellingShingle Blue whale
Detection
Lunge
Norm-jerk
Prey capture
Risso's dolphin
QH301 Biology
Signal Processing
Animal Science and Zoology
Instrumentation
Computer Networks and Communications
DAS
QH301
Sweeney, David A.
Deruiter, Stacy L.
McNamara-Oh, Ye Joo
Marques, Tiago A.
Arranz, Patricia
Calambokidis, John
Automated peak detection method for behavioral event identification : detecting Balaenoptera musculus and Grampus griseus feeding attempts
topic_facet Blue whale
Detection
Lunge
Norm-jerk
Prey capture
Risso's dolphin
QH301 Biology
Signal Processing
Animal Science and Zoology
Instrumentation
Computer Networks and Communications
DAS
QH301
description This project was supported by the U.S. Office of Naval Research (Grant No. N00014-16-1-3089). Tag deployments used here from the SOCAL-Behavioral Response Study were funded by the U.S. Office of Naval Research and Navy Living Marine Resources under multiple grants and contracts. Further funding was provided by the Kuipers Research Fellowship and the Calvin Alumni Association. TAM thanks partial support by CEAUL (funded by FCT—Fundação para a Ciência e a Tecnologia, Portugal, through the project UID/MAT/00006/2013). The desire of animal behaviorists for more flexible methods of conducting inter-study and inter-specific comparisons and meta-analysis of various animal behaviors compelled us to design an automated, animal behavior peak detection method that is potentially generalizable to a wide variety of data types, animals, and behaviors. We detected the times of feeding attempts by 12 Risso’s dolphins (Grampus griseus) and 36 blue whales (Balaenoptera musculus) using the norm-jerk (rate of change of acceleration) time series. The automated peak detection algorithm identified median true-positive rates of 0.881 for blue whale lunges and 0.410 for Risso’s dolphin prey capture attempts, with median false-positive rates of 0.096 and 0.007 and median miss rates of 0.113 and 0.314, respectively. Our study demonstrates that our peak detection method is efficient at automatically detecting animal behaviors from multisensor tag data with high accuracy for behaviors that are appropriately characterized by the data time series. Publisher PDF Peer reviewed
author2 Office of Naval Research
University of St Andrews. School of Mathematics and Statistics
University of St Andrews. Scottish Oceans Institute
University of St Andrews. Centre for Research into Ecological & Environmental Modelling
format Article in Journal/Newspaper
author Sweeney, David A.
Deruiter, Stacy L.
McNamara-Oh, Ye Joo
Marques, Tiago A.
Arranz, Patricia
Calambokidis, John
author_facet Sweeney, David A.
Deruiter, Stacy L.
McNamara-Oh, Ye Joo
Marques, Tiago A.
Arranz, Patricia
Calambokidis, John
author_sort Sweeney, David A.
title Automated peak detection method for behavioral event identification : detecting Balaenoptera musculus and Grampus griseus feeding attempts
title_short Automated peak detection method for behavioral event identification : detecting Balaenoptera musculus and Grampus griseus feeding attempts
title_full Automated peak detection method for behavioral event identification : detecting Balaenoptera musculus and Grampus griseus feeding attempts
title_fullStr Automated peak detection method for behavioral event identification : detecting Balaenoptera musculus and Grampus griseus feeding attempts
title_full_unstemmed Automated peak detection method for behavioral event identification : detecting Balaenoptera musculus and Grampus griseus feeding attempts
title_sort automated peak detection method for behavioral event identification : detecting balaenoptera musculus and grampus griseus feeding attempts
publishDate 2019
url http://hdl.handle.net/10023/17477
https://doi.org/10.1186/s40317-019-0169-3
long_lat ENVELOPE(165.100,165.100,-71.283,-71.283)
ENVELOPE(161.400,161.400,-77.900,-77.900)
geographic Calvin
Kuipers
geographic_facet Calvin
Kuipers
genre Balaenoptera musculus
Blue whale
genre_facet Balaenoptera musculus
Blue whale
op_relation Animal Biotelemetry
Sweeney , D A , Deruiter , S L , McNamara-Oh , Y J , Marques , T A , Arranz , P & Calambokidis , J 2019 , ' Automated peak detection method for behavioral event identification : detecting Balaenoptera musculus and Grampus griseus feeding attempts ' , Animal Biotelemetry , vol. 7 , 7 . https://doi.org/10.1186/s40317-019-0169-3
2050-3385
PURE: 258517854
PURE UUID: 2264f32e-c484-44e3-a852-22de8858bd84
RIS: urn:9EFDBE33155731F0FAE15B2EFFAE89F5
RIS: Sweeney2019
ORCID: /0000-0002-2581-1972/work/56861262
Scopus: 85063946899
WOS: 000696381300001
http://hdl.handle.net/10023/17477
https://doi.org/10.1186/s40317-019-0169-3
n00014-16-1-3089
op_rights Copyright © The Author(s) 2019. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
op_doi https://doi.org/10.1186/s40317-019-0169-3
container_title Animal Biotelemetry
container_volume 7
container_issue 1
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