Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations
ABSTRACT The long-term persistence of species in the face of climate change can be evaluated by examining the interplay between selection and genetic drift in the contemporary evolution of populations. In this study, we focused on spatial and temporal genetic variation in four populations of the col...
Main Authors: | , , , , , |
---|---|
Other Authors: | , , , , , , , , , |
Format: | Report |
Language: | English |
Published: |
HAL CCSD
2023
|
Subjects: | |
Online Access: | https://hal.science/hal-04287077 https://doi.org/10.1101/2023.05.22.541724 |
id |
ftsorbonneuniv:oai:HAL:hal-04287077v1 |
---|---|
record_format |
openpolar |
institution |
Open Polar |
collection |
HAL Sorbonne Université |
op_collection_id |
ftsorbonneuniv |
language |
English |
topic |
[SDE]Environmental Sciences [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] |
spellingShingle |
[SDE]Environmental Sciences [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] Reynes, Lauric Fouqueau, Louise Aurelle, Didier Mauger, Stéphane Destombe, Christophe Valero, Myriam Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations |
topic_facet |
[SDE]Environmental Sciences [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] |
description |
ABSTRACT The long-term persistence of species in the face of climate change can be evaluated by examining the interplay between selection and genetic drift in the contemporary evolution of populations. In this study, we focused on spatial and temporal genetic variation in four populations of the cold-water kelp Laminaria digitata using thousands of SNPs (ddRAD-seq). These populations were sampled from the center to the south margin in the North Atlantic at two different time points, spanning at least two generations. By conducting genome scans for local adaptation from a single time point, we successfully identified candidate loci that exhibited clinal variation, closely aligned with the latitudinal changes in temperature. This finding suggests that temperature may drive the adaptive response of kelp populations, although other factors, such as the species’ demographic history should be considered. Furthermore, we provided compelling evidence of positive selection through the examination of allele frequency changes over time, offering additional insights into the impact of genetic drift. Specifically, we detected candidate loci exhibiting temporal differentiation that surpassed the levels typically attributed to genetic drift at the south margin, confirmed through simulations. This finding was in sharp contrast with the lack of detection of outlier loci based on temporal differentiation in a population from the North Sea, exhibiting low levels of genetic diversity, that further decreased over time. These contrasting evolutionary scenarios among populations can be primarily attributed to the differential prevalence of selection relative to genetic drift. In conclusion, our study highlights the potential of temporal genomics to gain deeper insights into the contemporary evolution of marine foundation species in response to rapid environmental changes. |
author2 |
Biologie évolutive et écologie des algues = Evolutionary Biology and Ecology of Algae (EBEA) Pontificia Universidad Católica de Chile (UC)-Sorbonne Université (SU)-Universidad Austral de Chile-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff = Roscoff Marine Station (SBR) Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) Institut méditerranéen d'océanologie (MIO) Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) Institut de Systématique, Evolution, Biodiversité (ISYEB ) Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE) Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA) Ecologie Marine et BIOdiversité (EMBIO) Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) |
format |
Report |
author |
Reynes, Lauric Fouqueau, Louise Aurelle, Didier Mauger, Stéphane Destombe, Christophe Valero, Myriam |
author_facet |
Reynes, Lauric Fouqueau, Louise Aurelle, Didier Mauger, Stéphane Destombe, Christophe Valero, Myriam |
author_sort |
Reynes, Lauric |
title |
Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations |
title_short |
Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations |
title_full |
Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations |
title_fullStr |
Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations |
title_full_unstemmed |
Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations |
title_sort |
temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations |
publisher |
HAL CCSD |
publishDate |
2023 |
url |
https://hal.science/hal-04287077 https://doi.org/10.1101/2023.05.22.541724 |
genre |
North Atlantic |
genre_facet |
North Atlantic |
op_source |
https://hal.science/hal-04287077 2023 |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1101/2023.05.22.541724 hal-04287077 https://hal.science/hal-04287077 BIORXIV: 2023.05.22.541724 doi:10.1101/2023.05.22.541724 |
op_doi |
https://doi.org/10.1101/2023.05.22.541724 |
_version_ |
1799485332557660160 |
spelling |
ftsorbonneuniv:oai:HAL:hal-04287077v1 2024-05-19T07:45:19+00:00 Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations Reynes, Lauric Fouqueau, Louise Aurelle, Didier Mauger, Stéphane Destombe, Christophe Valero, Myriam Biologie évolutive et écologie des algues = Evolutionary Biology and Ecology of Algae (EBEA) Pontificia Universidad Católica de Chile (UC)-Sorbonne Université (SU)-Universidad Austral de Chile-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff = Roscoff Marine Station (SBR) Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) Institut méditerranéen d'océanologie (MIO) Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) Institut de Systématique, Evolution, Biodiversité (ISYEB ) Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE) Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA) Ecologie Marine et BIOdiversité (EMBIO) Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) 2023-11-15 https://hal.science/hal-04287077 https://doi.org/10.1101/2023.05.22.541724 en eng HAL CCSD info:eu-repo/semantics/altIdentifier/doi/10.1101/2023.05.22.541724 hal-04287077 https://hal.science/hal-04287077 BIORXIV: 2023.05.22.541724 doi:10.1101/2023.05.22.541724 https://hal.science/hal-04287077 2023 [SDE]Environmental Sciences [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] info:eu-repo/semantics/preprint Preprints, Working Papers, . 2023 ftsorbonneuniv https://doi.org/10.1101/2023.05.22.541724 2024-04-25T03:44:27Z ABSTRACT The long-term persistence of species in the face of climate change can be evaluated by examining the interplay between selection and genetic drift in the contemporary evolution of populations. In this study, we focused on spatial and temporal genetic variation in four populations of the cold-water kelp Laminaria digitata using thousands of SNPs (ddRAD-seq). These populations were sampled from the center to the south margin in the North Atlantic at two different time points, spanning at least two generations. By conducting genome scans for local adaptation from a single time point, we successfully identified candidate loci that exhibited clinal variation, closely aligned with the latitudinal changes in temperature. This finding suggests that temperature may drive the adaptive response of kelp populations, although other factors, such as the species’ demographic history should be considered. Furthermore, we provided compelling evidence of positive selection through the examination of allele frequency changes over time, offering additional insights into the impact of genetic drift. Specifically, we detected candidate loci exhibiting temporal differentiation that surpassed the levels typically attributed to genetic drift at the south margin, confirmed through simulations. This finding was in sharp contrast with the lack of detection of outlier loci based on temporal differentiation in a population from the North Sea, exhibiting low levels of genetic diversity, that further decreased over time. These contrasting evolutionary scenarios among populations can be primarily attributed to the differential prevalence of selection relative to genetic drift. In conclusion, our study highlights the potential of temporal genomics to gain deeper insights into the contemporary evolution of marine foundation species in response to rapid environmental changes. Report North Atlantic HAL Sorbonne Université |