The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium
International audience Brown algae are important organisms both because of their key ecological roles in coastal ecosystems and because of the remarkable biological features that they have acquired during their unusual evolutionary history. The recent sequencing of the complete genome of the filamen...
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Format: | Article in Journal/Newspaper |
Language: | English |
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HAL CCSD
2012
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Online Access: | https://hal.inrae.fr/hal-02649287 https://doi.org/10.1016/B978-0-12-391499-6.00005-0 |
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HAL Sorbonne Université |
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English |
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DIATOM THALASSIOSIRA-PSEUDONANA SILICULOSUS PHAEOPHYCEAE CHLAMYDOMONAS-REINHARDTII EVOLUTIONARY HISTORY IRON-DEFICIENCY NORTH-ATLANTIC PROTEIN FAMILY LAMINARIA-DIGITATA TOPOISOMERASE-VI PLANT MICRORNAS [SDV]Life Sciences [q-bio] |
spellingShingle |
DIATOM THALASSIOSIRA-PSEUDONANA SILICULOSUS PHAEOPHYCEAE CHLAMYDOMONAS-REINHARDTII EVOLUTIONARY HISTORY IRON-DEFICIENCY NORTH-ATLANTIC PROTEIN FAMILY LAMINARIA-DIGITATA TOPOISOMERASE-VI PLANT MICRORNAS [SDV]Life Sciences [q-bio] Cock, J. Mark Sterck, Lieven Ahmed, Sophia Allen, Andrew E. Amoutzias, Grigoris Anthouard, Véronique Artiguenave, Francois Arun, Alok Aury, Jean-Marc Badger, Jonathan H. Beszteri, Bank Billiau, Kenny Bonnet, Eric Bothwell, John H. Bowler, Chris Boyen, Catherine Brownlee, Colin Carrano, Carl J. Charrier, Benedicte Cho, Ga Youn Coelho, Susana M. Collen, Jonas Le Corguillé, Gildas Corre, Erwan Dartevelle, Laurence da Silva, Corinne Delage, Ludovic Delaroque, Nicolas Dittami, Simon, M. Doulbeau, Sylvie Elias, Marek Farnham, Garry Gachon, Claire M. M. Godfroy, Olivier Gschloessl, Bernhard Heesch, Svenja Jabbari, Kamel Jubin, Claire Kawai, Hiroshi Kimura, Kei Kloareg, Bernard Kuepper, Frithjof C. Lang, Daniel Le Bail, Aude Luthringer, Rémy Leblanc, Catherine Lerouge, Patrice Lohr, Martin Lopez, Pascal J. Macaisne, Nicolas Martens, Cindy Maumus, Florian Michel, Gurvan Miranda-Saavedra, Diego Morales, Julia Moreau, Herve Motomura, Taizo Nagasato, Chikako Napoli, Carolyn A. Nelson, David R. Nyvall-Collén, Pi Peters, Akira F. Pommier, Cyril Potin, Philippe Poulain, Julie Quesneville, Hadi Read, Betsy Rensing, Stefan A. Ritter, Andrés Rousvoal, Sylvie Samanta, Manoj Samson, Gaelle Schroeder, Declan C. Scornet, Delphine Ségurens, Béatrice Strittmatter, Martina Tonon, Thierry Tregear, James W. Valentin, Klaus von Dassow, Peter Yamagishi, Takahiro Rouzé, Pierre van de Peer, Yves Wincker, Patrick The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium |
topic_facet |
DIATOM THALASSIOSIRA-PSEUDONANA SILICULOSUS PHAEOPHYCEAE CHLAMYDOMONAS-REINHARDTII EVOLUTIONARY HISTORY IRON-DEFICIENCY NORTH-ATLANTIC PROTEIN FAMILY LAMINARIA-DIGITATA TOPOISOMERASE-VI PLANT MICRORNAS [SDV]Life Sciences [q-bio] |
description |
International audience Brown algae are important organisms both because of their key ecological roles in coastal ecosystems and because of the remarkable biological features that they have acquired during their unusual evolutionary history. The recent sequencing of the complete genome of the filamentous brown alga Ectocarpus has provided unprecedented access to the molecular processes that underlie brown algal biology. Analysis of the genome sequence, which exhibits several unusual structural features, identified genes that are predicted to play key roles in several aspects of brown algal metabolism, in the construction of the multicellular bodyplan and in resistance to biotic and abiotic stresses. Information from the genome sequence is currently being used in combination with other genomic, genetic and biochemical tools to further investigate these and other aspects of brown algal biology at the molecular level. Here, we review some of the major discoveries that emerged from the analysis of the Ectocarpus genome sequence, with a particular focus on the unusual genome structure, inferences about brown algal evolution and novel aspects of brown algal metabolism. |
author2 |
Université Pierre et Marie Curie - Paris 6 (UPMC) Signaux oligosaccharidiques et lipidiques (SOL) Station biologique de Roscoff Roscoff (SBR) Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-GOEMAR-Centre National de la Recherche Scientifique (CNRS) Dept Plant Syst Biol Universiteit Gent = Ghent University (UGENT) Dept Plant Biotechnol & Bioinformat J. Craig Venter Institute La Jolla, USA (JCVI) Inst Genom Commissariat à l'énergie atomique et aux énergies alternatives (CEA) Laboratoire de Bioinformatique pour la Génomique et la Biodiversité (LBGB) Génomique métabolique (UMR 8030) Genoscope - Centre national de séquençage Evry (GENOSCOPE) Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)-Genoscope - Centre national de séquençage Evry (GENOSCOPE) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS) Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research Partenaires INRAE Queen's University Belfast (QUB) Marine Biological Association École normale supérieure - Cachan (ENS Cachan) Stn Zool |
format |
Article in Journal/Newspaper |
author |
Cock, J. Mark Sterck, Lieven Ahmed, Sophia Allen, Andrew E. Amoutzias, Grigoris Anthouard, Véronique Artiguenave, Francois Arun, Alok Aury, Jean-Marc Badger, Jonathan H. Beszteri, Bank Billiau, Kenny Bonnet, Eric Bothwell, John H. Bowler, Chris Boyen, Catherine Brownlee, Colin Carrano, Carl J. Charrier, Benedicte Cho, Ga Youn Coelho, Susana M. Collen, Jonas Le Corguillé, Gildas Corre, Erwan Dartevelle, Laurence da Silva, Corinne Delage, Ludovic Delaroque, Nicolas Dittami, Simon, M. Doulbeau, Sylvie Elias, Marek Farnham, Garry Gachon, Claire M. M. Godfroy, Olivier Gschloessl, Bernhard Heesch, Svenja Jabbari, Kamel Jubin, Claire Kawai, Hiroshi Kimura, Kei Kloareg, Bernard Kuepper, Frithjof C. Lang, Daniel Le Bail, Aude Luthringer, Rémy Leblanc, Catherine Lerouge, Patrice Lohr, Martin Lopez, Pascal J. Macaisne, Nicolas Martens, Cindy Maumus, Florian Michel, Gurvan Miranda-Saavedra, Diego Morales, Julia Moreau, Herve Motomura, Taizo Nagasato, Chikako Napoli, Carolyn A. Nelson, David R. Nyvall-Collén, Pi Peters, Akira F. Pommier, Cyril Potin, Philippe Poulain, Julie Quesneville, Hadi Read, Betsy Rensing, Stefan A. Ritter, Andrés Rousvoal, Sylvie Samanta, Manoj Samson, Gaelle Schroeder, Declan C. Scornet, Delphine Ségurens, Béatrice Strittmatter, Martina Tonon, Thierry Tregear, James W. Valentin, Klaus von Dassow, Peter Yamagishi, Takahiro Rouzé, Pierre van de Peer, Yves Wincker, Patrick |
author_facet |
Cock, J. Mark Sterck, Lieven Ahmed, Sophia Allen, Andrew E. Amoutzias, Grigoris Anthouard, Véronique Artiguenave, Francois Arun, Alok Aury, Jean-Marc Badger, Jonathan H. Beszteri, Bank Billiau, Kenny Bonnet, Eric Bothwell, John H. Bowler, Chris Boyen, Catherine Brownlee, Colin Carrano, Carl J. Charrier, Benedicte Cho, Ga Youn Coelho, Susana M. Collen, Jonas Le Corguillé, Gildas Corre, Erwan Dartevelle, Laurence da Silva, Corinne Delage, Ludovic Delaroque, Nicolas Dittami, Simon, M. Doulbeau, Sylvie Elias, Marek Farnham, Garry Gachon, Claire M. M. Godfroy, Olivier Gschloessl, Bernhard Heesch, Svenja Jabbari, Kamel Jubin, Claire Kawai, Hiroshi Kimura, Kei Kloareg, Bernard Kuepper, Frithjof C. Lang, Daniel Le Bail, Aude Luthringer, Rémy Leblanc, Catherine Lerouge, Patrice Lohr, Martin Lopez, Pascal J. Macaisne, Nicolas Martens, Cindy Maumus, Florian Michel, Gurvan Miranda-Saavedra, Diego Morales, Julia Moreau, Herve Motomura, Taizo Nagasato, Chikako Napoli, Carolyn A. Nelson, David R. Nyvall-Collén, Pi Peters, Akira F. Pommier, Cyril Potin, Philippe Poulain, Julie Quesneville, Hadi Read, Betsy Rensing, Stefan A. Ritter, Andrés Rousvoal, Sylvie Samanta, Manoj Samson, Gaelle Schroeder, Declan C. Scornet, Delphine Ségurens, Béatrice Strittmatter, Martina Tonon, Thierry Tregear, James W. Valentin, Klaus von Dassow, Peter Yamagishi, Takahiro Rouzé, Pierre van de Peer, Yves Wincker, Patrick |
author_sort |
Cock, J. Mark |
title |
The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium |
title_short |
The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium |
title_full |
The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium |
title_fullStr |
The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium |
title_full_unstemmed |
The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium |
title_sort |
ectocarpus genome and brown algal genomics the ectocarpus genome consortium |
publisher |
HAL CCSD |
publishDate |
2012 |
url |
https://hal.inrae.fr/hal-02649287 https://doi.org/10.1016/B978-0-12-391499-6.00005-0 |
genre |
North Atlantic |
genre_facet |
North Atlantic |
op_source |
ISSN: 0065-2296 Advances in Botanical Research https://hal.inrae.fr/hal-02649287 Advances in Botanical Research, 2012, 64, pp.141 - 184. ⟨10.1016/B978-0-12-391499-6.00005-0⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1016/B978-0-12-391499-6.00005-0 hal-02649287 https://hal.inrae.fr/hal-02649287 doi:10.1016/B978-0-12-391499-6.00005-0 PRODINRA: 216138 WOS: 000314133300006 |
op_doi |
https://doi.org/10.1016/B978-0-12-391499-6.00005-0 |
container_start_page |
141 |
op_container_end_page |
184 |
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1812179343560933376 |
spelling |
ftsorbonneuniv:oai:HAL:hal-02649287v1 2024-10-06T13:51:09+00:00 The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium Cock, J. Mark Sterck, Lieven Ahmed, Sophia Allen, Andrew E. Amoutzias, Grigoris Anthouard, Véronique Artiguenave, Francois Arun, Alok Aury, Jean-Marc Badger, Jonathan H. Beszteri, Bank Billiau, Kenny Bonnet, Eric Bothwell, John H. Bowler, Chris Boyen, Catherine Brownlee, Colin Carrano, Carl J. Charrier, Benedicte Cho, Ga Youn Coelho, Susana M. Collen, Jonas Le Corguillé, Gildas Corre, Erwan Dartevelle, Laurence da Silva, Corinne Delage, Ludovic Delaroque, Nicolas Dittami, Simon, M. Doulbeau, Sylvie Elias, Marek Farnham, Garry Gachon, Claire M. M. Godfroy, Olivier Gschloessl, Bernhard Heesch, Svenja Jabbari, Kamel Jubin, Claire Kawai, Hiroshi Kimura, Kei Kloareg, Bernard Kuepper, Frithjof C. Lang, Daniel Le Bail, Aude Luthringer, Rémy Leblanc, Catherine Lerouge, Patrice Lohr, Martin Lopez, Pascal J. Macaisne, Nicolas Martens, Cindy Maumus, Florian Michel, Gurvan Miranda-Saavedra, Diego Morales, Julia Moreau, Herve Motomura, Taizo Nagasato, Chikako Napoli, Carolyn A. Nelson, David R. Nyvall-Collén, Pi Peters, Akira F. Pommier, Cyril Potin, Philippe Poulain, Julie Quesneville, Hadi Read, Betsy Rensing, Stefan A. Ritter, Andrés Rousvoal, Sylvie Samanta, Manoj Samson, Gaelle Schroeder, Declan C. Scornet, Delphine Ségurens, Béatrice Strittmatter, Martina Tonon, Thierry Tregear, James W. Valentin, Klaus von Dassow, Peter Yamagishi, Takahiro Rouzé, Pierre van de Peer, Yves Wincker, Patrick Université Pierre et Marie Curie - Paris 6 (UPMC) Signaux oligosaccharidiques et lipidiques (SOL) Station biologique de Roscoff Roscoff (SBR) Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-GOEMAR-Centre National de la Recherche Scientifique (CNRS) Dept Plant Syst Biol Universiteit Gent = Ghent University (UGENT) Dept Plant Biotechnol & Bioinformat J. Craig Venter Institute La Jolla, USA (JCVI) Inst Genom Commissariat à l'énergie atomique et aux énergies alternatives (CEA) Laboratoire de Bioinformatique pour la Génomique et la Biodiversité (LBGB) Génomique métabolique (UMR 8030) Genoscope - Centre national de séquençage Evry (GENOSCOPE) Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)-Genoscope - Centre national de séquençage Evry (GENOSCOPE) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS) Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research Partenaires INRAE Queen's University Belfast (QUB) Marine Biological Association École normale supérieure - Cachan (ENS Cachan) Stn Zool 2012 https://hal.inrae.fr/hal-02649287 https://doi.org/10.1016/B978-0-12-391499-6.00005-0 en eng HAL CCSD Elsevier info:eu-repo/semantics/altIdentifier/doi/10.1016/B978-0-12-391499-6.00005-0 hal-02649287 https://hal.inrae.fr/hal-02649287 doi:10.1016/B978-0-12-391499-6.00005-0 PRODINRA: 216138 WOS: 000314133300006 ISSN: 0065-2296 Advances in Botanical Research https://hal.inrae.fr/hal-02649287 Advances in Botanical Research, 2012, 64, pp.141 - 184. ⟨10.1016/B978-0-12-391499-6.00005-0⟩ DIATOM THALASSIOSIRA-PSEUDONANA SILICULOSUS PHAEOPHYCEAE CHLAMYDOMONAS-REINHARDTII EVOLUTIONARY HISTORY IRON-DEFICIENCY NORTH-ATLANTIC PROTEIN FAMILY LAMINARIA-DIGITATA TOPOISOMERASE-VI PLANT MICRORNAS [SDV]Life Sciences [q-bio] info:eu-repo/semantics/article Journal articles 2012 ftsorbonneuniv https://doi.org/10.1016/B978-0-12-391499-6.00005-0 2024-09-06T00:03:58Z International audience Brown algae are important organisms both because of their key ecological roles in coastal ecosystems and because of the remarkable biological features that they have acquired during their unusual evolutionary history. The recent sequencing of the complete genome of the filamentous brown alga Ectocarpus has provided unprecedented access to the molecular processes that underlie brown algal biology. Analysis of the genome sequence, which exhibits several unusual structural features, identified genes that are predicted to play key roles in several aspects of brown algal metabolism, in the construction of the multicellular bodyplan and in resistance to biotic and abiotic stresses. Information from the genome sequence is currently being used in combination with other genomic, genetic and biochemical tools to further investigate these and other aspects of brown algal biology at the molecular level. Here, we review some of the major discoveries that emerged from the analysis of the Ectocarpus genome sequence, with a particular focus on the unusual genome structure, inferences about brown algal evolution and novel aspects of brown algal metabolism. Article in Journal/Newspaper North Atlantic HAL Sorbonne Université 141 184 |