Methods for improving species distribution models in data-poor areas: example of sub-Antarctic benthic species on the Kerguelen Plateau.

International audience Species distribution models (SDMs) are essential tools to aid conservation biologists in evaluating the combined effects of environmental change and human activities on natural habitats and for the development of relevant conservation plans. However, modeling species distribut...

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Published in:Marine Ecology Progress Series
Main Authors: Guillaumot, Charlène, Martin, Alexis, Eléaume, Marc, Saucède, Thomas
Other Authors: Laboratoire de Biologie Marine, Université libre de Bruxelles (ULB), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-Université Pierre et Marie Curie - Paris 6 (UPMC)-École Pratique des Hautes Études (EPHE), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Biogéosciences UMR 6282 (BGS), Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS)
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2018
Subjects:
Online Access:https://hal.science/hal-01806930
https://hal.science/hal-01806930/document
https://hal.science/hal-01806930/file/Guillaumot%20et%20al%202018%20MEPS.pdf
https://doi.org/10.3354/meps12538
id ftsorbonneuniv:oai:HAL:hal-01806930v1
record_format openpolar
institution Open Polar
collection HAL Sorbonne Université
op_collection_id ftsorbonneuniv
language English
topic Species distribution modeling
Model performance
Historical datasets
Kerguelen Plateau
Presence-only data
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
[SDV.EE.ECO]Life Sciences [q-bio]/Ecology
environment/Ecosystems
[STAT.ME]Statistics [stat]/Methodology [stat.ME]
spellingShingle Species distribution modeling
Model performance
Historical datasets
Kerguelen Plateau
Presence-only data
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
[SDV.EE.ECO]Life Sciences [q-bio]/Ecology
environment/Ecosystems
[STAT.ME]Statistics [stat]/Methodology [stat.ME]
Guillaumot, Charlène
Martin, Alexis
Eléaume, Marc
Saucède, Thomas
Methods for improving species distribution models in data-poor areas: example of sub-Antarctic benthic species on the Kerguelen Plateau.
topic_facet Species distribution modeling
Model performance
Historical datasets
Kerguelen Plateau
Presence-only data
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
[SDV.EE.ECO]Life Sciences [q-bio]/Ecology
environment/Ecosystems
[STAT.ME]Statistics [stat]/Methodology [stat.ME]
description International audience Species distribution models (SDMs) are essential tools to aid conservation biologists in evaluating the combined effects of environmental change and human activities on natural habitats and for the development of relevant conservation plans. However, modeling species distributions over vast and remote regions is often challenging due to poor and heterogeneous data sets, and this raises questions regarding the relevance of the modeling procedures. In recent years, there have been many methodological developments in SDM procedures using virtual species and broad data sets, but few solutions have been proposed to deal with poor or heterogeneous data. In the present work, we address this methodological challenge by studying the performance of different modeling procedures based on 4 real species, using presence-only data compiled from various oceanographic surveys on the Kerguelen Plateau (Southern Ocean). We followed a practical protocol to test for the reliability and performance of the models and to correct for limited and aggregated data, as well as accounting for spatial and temporal sampling biases. Our results show that producing reliable SDMs is feasible as long as the amount and quality of available data allow testing and correcting for these biases. However, we found that SDMs could be corrected for spatial and temporal heterogeneities in only 1 of the 4 species we examined, highlighting the need to consider all potential biases when modeling species distributions. Finally, we show that model reliability and performance also depend on the interaction between the incompleteness of the data and species niches, with the distribution of narrow-niche species being less sensitive to data gaps than species occupying wider niches.
author2 Laboratoire de Biologie Marine
Université libre de Bruxelles (ULB)
Biologie des Organismes et Ecosystèmes Aquatiques (BOREA)
Université de Caen Normandie (UNICAEN)
Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
Institut de Systématique, Evolution, Biodiversité (ISYEB )
Muséum national d'Histoire naturelle (MNHN)-Université Pierre et Marie Curie - Paris 6 (UPMC)-École Pratique des Hautes Études (EPHE)
Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)
Biogéosciences UMR 6282 (BGS)
Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS)
format Article in Journal/Newspaper
author Guillaumot, Charlène
Martin, Alexis
Eléaume, Marc
Saucède, Thomas
author_facet Guillaumot, Charlène
Martin, Alexis
Eléaume, Marc
Saucède, Thomas
author_sort Guillaumot, Charlène
title Methods for improving species distribution models in data-poor areas: example of sub-Antarctic benthic species on the Kerguelen Plateau.
title_short Methods for improving species distribution models in data-poor areas: example of sub-Antarctic benthic species on the Kerguelen Plateau.
title_full Methods for improving species distribution models in data-poor areas: example of sub-Antarctic benthic species on the Kerguelen Plateau.
title_fullStr Methods for improving species distribution models in data-poor areas: example of sub-Antarctic benthic species on the Kerguelen Plateau.
title_full_unstemmed Methods for improving species distribution models in data-poor areas: example of sub-Antarctic benthic species on the Kerguelen Plateau.
title_sort methods for improving species distribution models in data-poor areas: example of sub-antarctic benthic species on the kerguelen plateau.
publisher HAL CCSD
publishDate 2018
url https://hal.science/hal-01806930
https://hal.science/hal-01806930/document
https://hal.science/hal-01806930/file/Guillaumot%20et%20al%202018%20MEPS.pdf
https://doi.org/10.3354/meps12538
genre Antarc*
Antarctic
Southern Ocean
genre_facet Antarc*
Antarctic
Southern Ocean
op_source ISSN: 0171-8630
EISSN: 1616-1599
Marine Ecology Progress Series
https://hal.science/hal-01806930
Marine Ecology Progress Series, 2018, 594, pp.149-164. ⟨10.3354/meps12538⟩
https://www.int-res.com/abstracts/meps/v594/p149-164
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op_rights info:eu-repo/semantics/OpenAccess
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container_title Marine Ecology Progress Series
container_volume 594
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spelling ftsorbonneuniv:oai:HAL:hal-01806930v1 2024-05-19T07:28:47+00:00 Methods for improving species distribution models in data-poor areas: example of sub-Antarctic benthic species on the Kerguelen Plateau. Guillaumot, Charlène Martin, Alexis Eléaume, Marc Saucède, Thomas Laboratoire de Biologie Marine Université libre de Bruxelles (ULB) Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) Université de Caen Normandie (UNICAEN) Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA) Institut de Systématique, Evolution, Biodiversité (ISYEB ) Muséum national d'Histoire naturelle (MNHN)-Université Pierre et Marie Curie - Paris 6 (UPMC)-École Pratique des Hautes Études (EPHE) Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Centre National de la Recherche Scientifique (CNRS) Biogéosciences UMR 6282 (BGS) Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS) 2018 https://hal.science/hal-01806930 https://hal.science/hal-01806930/document https://hal.science/hal-01806930/file/Guillaumot%20et%20al%202018%20MEPS.pdf https://doi.org/10.3354/meps12538 en eng HAL CCSD Inter Research info:eu-repo/semantics/altIdentifier/doi/10.3354/meps12538 hal-01806930 https://hal.science/hal-01806930 https://hal.science/hal-01806930/document https://hal.science/hal-01806930/file/Guillaumot%20et%20al%202018%20MEPS.pdf doi:10.3354/meps12538 info:eu-repo/semantics/OpenAccess ISSN: 0171-8630 EISSN: 1616-1599 Marine Ecology Progress Series https://hal.science/hal-01806930 Marine Ecology Progress Series, 2018, 594, pp.149-164. ⟨10.3354/meps12538⟩ https://www.int-res.com/abstracts/meps/v594/p149-164 Species distribution modeling Model performance Historical datasets Kerguelen Plateau Presence-only data [SDE.BE]Environmental Sciences/Biodiversity and Ecology [SDV.EE.ECO]Life Sciences [q-bio]/Ecology environment/Ecosystems [STAT.ME]Statistics [stat]/Methodology [stat.ME] info:eu-repo/semantics/article Journal articles 2018 ftsorbonneuniv https://doi.org/10.3354/meps12538 2024-04-25T03:42:20Z International audience Species distribution models (SDMs) are essential tools to aid conservation biologists in evaluating the combined effects of environmental change and human activities on natural habitats and for the development of relevant conservation plans. However, modeling species distributions over vast and remote regions is often challenging due to poor and heterogeneous data sets, and this raises questions regarding the relevance of the modeling procedures. In recent years, there have been many methodological developments in SDM procedures using virtual species and broad data sets, but few solutions have been proposed to deal with poor or heterogeneous data. In the present work, we address this methodological challenge by studying the performance of different modeling procedures based on 4 real species, using presence-only data compiled from various oceanographic surveys on the Kerguelen Plateau (Southern Ocean). We followed a practical protocol to test for the reliability and performance of the models and to correct for limited and aggregated data, as well as accounting for spatial and temporal sampling biases. Our results show that producing reliable SDMs is feasible as long as the amount and quality of available data allow testing and correcting for these biases. However, we found that SDMs could be corrected for spatial and temporal heterogeneities in only 1 of the 4 species we examined, highlighting the need to consider all potential biases when modeling species distributions. Finally, we show that model reliability and performance also depend on the interaction between the incompleteness of the data and species niches, with the distribution of narrow-niche species being less sensitive to data gaps than species occupying wider niches. Article in Journal/Newspaper Antarc* Antarctic Southern Ocean HAL Sorbonne Université Marine Ecology Progress Series 594 149 164