A cDNA microarray for Crassostrea virginica and C. gigas.
International audience The eastern oyster, Crassostrea virginica, and the Pacific oyster, C. gigas, are species of global economic significance as well as important components of estuarine ecosystems and models for genetic and environmental studies. To enhance the molecular tools available for oyste...
Published in: | Marine Biotechnology |
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Main Authors: | , , , , , , , , , , , , , , , , , , , , , |
Other Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
HAL CCSD
2007
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Online Access: | https://hal.univ-brest.fr/hal-00669982 https://doi.org/10.1007/s10126-007-9041-1 |
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Open Polar |
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HAL Sorbonne Université |
op_collection_id |
ftsorbonneuniv |
language |
English |
topic |
bivalve Crassostrea gigas Crassostrea virginica heterologous hybridization microarray oyster [SDE]Environmental Sciences |
spellingShingle |
bivalve Crassostrea gigas Crassostrea virginica heterologous hybridization microarray oyster [SDE]Environmental Sciences Jenny, Matthew J Chapman, Robert W Mancia, Annalaura Chen, Yian A Mckillen, David, J. Trent, Hal Lang, Paul Escoubas, Jean-Michel Bachere, Evelyne Boulo, Viviane Liu, Z John Gross, Paul S Cunningham, Charles Cupit, Pauline M Tanguy, Arnaud Guo, Ximing Moraga, Dario Boutet, Isabelle Huvet, Arnaud de Guise, Sylvain Almeida, Jonas S Warr, Gregory W A cDNA microarray for Crassostrea virginica and C. gigas. |
topic_facet |
bivalve Crassostrea gigas Crassostrea virginica heterologous hybridization microarray oyster [SDE]Environmental Sciences |
description |
International audience The eastern oyster, Crassostrea virginica, and the Pacific oyster, C. gigas, are species of global economic significance as well as important components of estuarine ecosystems and models for genetic and environmental studies. To enhance the molecular tools available for oyster research, an international group of collaborators has constructed a 27,496-feature cDNA microarray containing 4460 sequences derived from C. virginica, 2320 from C. gigas, and 16 non-oyster DNAs serving as positive and negative controls. The performance of the array was assessed by gene expression profiling using gill and digestive gland RNA derived from both C. gigas and C. virginica, and digestive gland RNA from C. ariakensis. The utility of the microarray for detection of homologous genes by cross-hybridization between species was also assessed and the correlation between hybridization intensity and sequence homology for selected genes determined. The oyster cDNA microarray is publicly available to the research community on a cost-recovery basis. |
author2 |
Hollings Marine Laboratory National Institute of Standards and Technology Gaithersburg (NIST) Biology Department (WHOI) Woods Hole Oceanographic Institution (WHOI) South Carolina Department of Natural Resources Marine Resources Research Institute Biochemistry and Molecular Biology Medical University of South Carolina Charleston (MUSC) Department of Statistics Texas AM University Department of Fisheries and Wildlife Oregon State University (OSU) Ecologie microbienne des insectes et interactions hôte-pathogène (EMIP) Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2) Génome, populations, interactions, adaptation (GPIA) Université Montpellier 2 - Sciences et Techniques (UM2)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS) Unité Lagons, Ecosystèmes et Aquaculture Durable en Nouvelle-Calédonie (LEADNC) Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER) Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences Auburn University (AU) Department of Biology New Mexico The University of New Mexico Albuquerque Adaptation et diversité en milieu marin (AD2M) Station biologique de Roscoff Roscoff (SBR) Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) Haskin Shellfish Research Laboratory (HSRL) Rutgers, The State University of New Jersey New Brunswick (RU) Rutgers University System (Rutgers)-Rutgers University System (Rutgers) Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR) Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM) Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) Physiologie et Ecophysiologie des Mollusques Marins (PE2M) Université de Caen Normandie (UNICAEN) Normandie Université (NU)-Normandie Université (NU)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS) Department of Pathobiology University of Connecticut (UCONN) Program in Biomathematics and Biostatistics The University of Texas Health Science Center at Houston (UTHealth) Department of Biochemistry and Molecular Biology |
format |
Article in Journal/Newspaper |
author |
Jenny, Matthew J Chapman, Robert W Mancia, Annalaura Chen, Yian A Mckillen, David, J. Trent, Hal Lang, Paul Escoubas, Jean-Michel Bachere, Evelyne Boulo, Viviane Liu, Z John Gross, Paul S Cunningham, Charles Cupit, Pauline M Tanguy, Arnaud Guo, Ximing Moraga, Dario Boutet, Isabelle Huvet, Arnaud de Guise, Sylvain Almeida, Jonas S Warr, Gregory W |
author_facet |
Jenny, Matthew J Chapman, Robert W Mancia, Annalaura Chen, Yian A Mckillen, David, J. Trent, Hal Lang, Paul Escoubas, Jean-Michel Bachere, Evelyne Boulo, Viviane Liu, Z John Gross, Paul S Cunningham, Charles Cupit, Pauline M Tanguy, Arnaud Guo, Ximing Moraga, Dario Boutet, Isabelle Huvet, Arnaud de Guise, Sylvain Almeida, Jonas S Warr, Gregory W |
author_sort |
Jenny, Matthew J |
title |
A cDNA microarray for Crassostrea virginica and C. gigas. |
title_short |
A cDNA microarray for Crassostrea virginica and C. gigas. |
title_full |
A cDNA microarray for Crassostrea virginica and C. gigas. |
title_fullStr |
A cDNA microarray for Crassostrea virginica and C. gigas. |
title_full_unstemmed |
A cDNA microarray for Crassostrea virginica and C. gigas. |
title_sort |
cdna microarray for crassostrea virginica and c. gigas. |
publisher |
HAL CCSD |
publishDate |
2007 |
url |
https://hal.univ-brest.fr/hal-00669982 https://doi.org/10.1007/s10126-007-9041-1 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Crassostrea gigas Pacific oyster |
genre_facet |
Crassostrea gigas Pacific oyster |
op_source |
ISSN: 1436-2228 EISSN: 1436-2236 Marine Biotechnology https://hal.univ-brest.fr/hal-00669982 Marine Biotechnology, 2007, 9 (5), pp.577-91. ⟨10.1007/s10126-007-9041-1⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1007/s10126-007-9041-1 info:eu-repo/semantics/altIdentifier/pmid/17668266 hal-00669982 https://hal.univ-brest.fr/hal-00669982 doi:10.1007/s10126-007-9041-1 PRODINRA: 245625 PUBMED: 17668266 |
op_doi |
https://doi.org/10.1007/s10126-007-9041-1 |
container_title |
Marine Biotechnology |
container_volume |
9 |
container_issue |
5 |
container_start_page |
577 |
op_container_end_page |
591 |
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1798844872943206400 |
spelling |
ftsorbonneuniv:oai:HAL:hal-00669982v1 2024-05-12T08:02:44+00:00 A cDNA microarray for Crassostrea virginica and C. gigas. Jenny, Matthew J Chapman, Robert W Mancia, Annalaura Chen, Yian A Mckillen, David, J. Trent, Hal Lang, Paul Escoubas, Jean-Michel Bachere, Evelyne Boulo, Viviane Liu, Z John Gross, Paul S Cunningham, Charles Cupit, Pauline M Tanguy, Arnaud Guo, Ximing Moraga, Dario Boutet, Isabelle Huvet, Arnaud de Guise, Sylvain Almeida, Jonas S Warr, Gregory W Hollings Marine Laboratory National Institute of Standards and Technology Gaithersburg (NIST) Biology Department (WHOI) Woods Hole Oceanographic Institution (WHOI) South Carolina Department of Natural Resources Marine Resources Research Institute Biochemistry and Molecular Biology Medical University of South Carolina Charleston (MUSC) Department of Statistics Texas AM University Department of Fisheries and Wildlife Oregon State University (OSU) Ecologie microbienne des insectes et interactions hôte-pathogène (EMIP) Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2) Génome, populations, interactions, adaptation (GPIA) Université Montpellier 2 - Sciences et Techniques (UM2)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS) Unité Lagons, Ecosystèmes et Aquaculture Durable en Nouvelle-Calédonie (LEADNC) Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER) Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences Auburn University (AU) Department of Biology New Mexico The University of New Mexico Albuquerque Adaptation et diversité en milieu marin (AD2M) Station biologique de Roscoff Roscoff (SBR) Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) Haskin Shellfish Research Laboratory (HSRL) Rutgers, The State University of New Jersey New Brunswick (RU) Rutgers University System (Rutgers)-Rutgers University System (Rutgers) Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR) Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM) Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) Physiologie et Ecophysiologie des Mollusques Marins (PE2M) Université de Caen Normandie (UNICAEN) Normandie Université (NU)-Normandie Université (NU)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS) Department of Pathobiology University of Connecticut (UCONN) Program in Biomathematics and Biostatistics The University of Texas Health Science Center at Houston (UTHealth) Department of Biochemistry and Molecular Biology 2007 https://hal.univ-brest.fr/hal-00669982 https://doi.org/10.1007/s10126-007-9041-1 en eng HAL CCSD Springer Verlag info:eu-repo/semantics/altIdentifier/doi/10.1007/s10126-007-9041-1 info:eu-repo/semantics/altIdentifier/pmid/17668266 hal-00669982 https://hal.univ-brest.fr/hal-00669982 doi:10.1007/s10126-007-9041-1 PRODINRA: 245625 PUBMED: 17668266 ISSN: 1436-2228 EISSN: 1436-2236 Marine Biotechnology https://hal.univ-brest.fr/hal-00669982 Marine Biotechnology, 2007, 9 (5), pp.577-91. ⟨10.1007/s10126-007-9041-1⟩ bivalve Crassostrea gigas Crassostrea virginica heterologous hybridization microarray oyster [SDE]Environmental Sciences info:eu-repo/semantics/article Journal articles 2007 ftsorbonneuniv https://doi.org/10.1007/s10126-007-9041-1 2024-04-18T03:18:57Z International audience The eastern oyster, Crassostrea virginica, and the Pacific oyster, C. gigas, are species of global economic significance as well as important components of estuarine ecosystems and models for genetic and environmental studies. To enhance the molecular tools available for oyster research, an international group of collaborators has constructed a 27,496-feature cDNA microarray containing 4460 sequences derived from C. virginica, 2320 from C. gigas, and 16 non-oyster DNAs serving as positive and negative controls. The performance of the array was assessed by gene expression profiling using gill and digestive gland RNA derived from both C. gigas and C. virginica, and digestive gland RNA from C. ariakensis. The utility of the microarray for detection of homologous genes by cross-hybridization between species was also assessed and the correlation between hybridization intensity and sequence homology for selected genes determined. The oyster cDNA microarray is publicly available to the research community on a cost-recovery basis. Article in Journal/Newspaper Crassostrea gigas Pacific oyster HAL Sorbonne Université Pacific Marine Biotechnology 9 5 577 591 |