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spelling ftsmithonian:oai:figshare.com:article/19067089 2023-05-15T17:05:21+02:00 Spearman’s correlation coefficient ( r ) between nucleotide diversity ( π panel a) or estimates of linkage disequilibrium effective population size ( N eLD panel b) and different diversity variables, estimated within genomic regions. Irene Novo (11999512) Enrique Santiago (11656907) Armando Caballero (439234) 2022-01-25T18:41:08Z https://doi.org/10.1371/journal.pgen.1009764.g005 unknown https://figshare.com/articles/figure/Spearman_s_correlation_coefficient_i_r_i_between_nucleotide_diversity_i_i_panel_a_or_estimates_of_linkage_disequilibrium_effective_population_size_i_N_i_sub_i_eLD_i_sub_panel_b_and_different_diversity_variables_estimated_within_genomic_regi/19067089 doi:10.1371/journal.pgen.1009764.g005 CC BY 4.0 CC-BY Genetics Evolutionary Biology Ecology Science Policy Infectious Diseases Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified minor allele frequency >< sub >< ></ sub > ></ sub >) particular genomic regions ld </ sub div >< p background selection statistic recombination rate heterogeneity ></ sub recombination rate different regions n </ e </ virtually unaffected strongly affected simulation results reduce diversity polymorphic sites nucleotide diversity missense variants linkage disequilibrium key parameter increasing availability important implications human evolution human demography human data genetic drift gene density diversity parameters directional selection computer simulations coalescence mutation based methods Image Figure 2022 ftsmithonian https://doi.org/10.1371/journal.pgen.1009764.g005 2022-02-07T17:29:20Z RR : recombination rate; B : B statistic; P : proportion of polymorphic nucleotides; MAF: Minor Allele Frequency; LoF : number of Loss of Function variants; missense : number of missense variants; gene dens : gene density. Estimates are based on samples of n = 99 for Finnish and n = 16 for Koryaks populations. P-values: * < 0.05, *** <0.001. Still Image Koryaks Unknown
institution Open Polar
collection Unknown
op_collection_id ftsmithonian
language unknown
topic Genetics
Evolutionary Biology
Ecology
Science Policy
Infectious Diseases
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
minor allele frequency
>< sub ><
></ sub >
></ sub >)
particular genomic regions
ld </ sub
div >< p
background selection statistic
recombination rate heterogeneity
></ sub
recombination rate
different regions
n </
e </
virtually unaffected
strongly affected
simulation results
reduce diversity
polymorphic sites
nucleotide diversity
missense variants
linkage disequilibrium
key parameter
increasing availability
important implications
human evolution
human demography
human data
genetic drift
gene density
diversity parameters
directional selection
computer simulations
coalescence mutation
based methods
spellingShingle Genetics
Evolutionary Biology
Ecology
Science Policy
Infectious Diseases
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
minor allele frequency
>< sub ><
></ sub >
></ sub >)
particular genomic regions
ld </ sub
div >< p
background selection statistic
recombination rate heterogeneity
></ sub
recombination rate
different regions
n </
e </
virtually unaffected
strongly affected
simulation results
reduce diversity
polymorphic sites
nucleotide diversity
missense variants
linkage disequilibrium
key parameter
increasing availability
important implications
human evolution
human demography
human data
genetic drift
gene density
diversity parameters
directional selection
computer simulations
coalescence mutation
based methods
Irene Novo (11999512)
Enrique Santiago (11656907)
Armando Caballero (439234)
Spearman’s correlation coefficient ( r ) between nucleotide diversity ( π
topic_facet Genetics
Evolutionary Biology
Ecology
Science Policy
Infectious Diseases
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
minor allele frequency
>< sub ><
></ sub >
></ sub >)
particular genomic regions
ld </ sub
div >< p
background selection statistic
recombination rate heterogeneity
></ sub
recombination rate
different regions
n </
e </
virtually unaffected
strongly affected
simulation results
reduce diversity
polymorphic sites
nucleotide diversity
missense variants
linkage disequilibrium
key parameter
increasing availability
important implications
human evolution
human demography
human data
genetic drift
gene density
diversity parameters
directional selection
computer simulations
coalescence mutation
based methods
description RR : recombination rate; B : B statistic; P : proportion of polymorphic nucleotides; MAF: Minor Allele Frequency; LoF : number of Loss of Function variants; missense : number of missense variants; gene dens : gene density. Estimates are based on samples of n = 99 for Finnish and n = 16 for Koryaks populations. P-values: * < 0.05, *** <0.001.
format Still Image
author Irene Novo (11999512)
Enrique Santiago (11656907)
Armando Caballero (439234)
author_facet Irene Novo (11999512)
Enrique Santiago (11656907)
Armando Caballero (439234)
author_sort Irene Novo (11999512)
title Spearman’s correlation coefficient ( r ) between nucleotide diversity ( π
title_short Spearman’s correlation coefficient ( r ) between nucleotide diversity ( π
title_full Spearman’s correlation coefficient ( r ) between nucleotide diversity ( π
title_fullStr Spearman’s correlation coefficient ( r ) between nucleotide diversity ( π
title_full_unstemmed Spearman’s correlation coefficient ( r ) between nucleotide diversity ( π
title_sort spearman’s correlation coefficient ( r ) between nucleotide diversity ( π
publishDate 2022
url https://doi.org/10.1371/journal.pgen.1009764.g005
genre Koryaks
genre_facet Koryaks
op_relation https://figshare.com/articles/figure/Spearman_s_correlation_coefficient_i_r_i_between_nucleotide_diversity_i_i_panel_a_or_estimates_of_linkage_disequilibrium_effective_population_size_i_N_i_sub_i_eLD_i_sub_panel_b_and_different_diversity_variables_estimated_within_genomic_regi/19067089
doi:10.1371/journal.pgen.1009764.g005
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pgen.1009764.g005
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