Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool.

The tool extracted 91 core genes from the genomes of nearest neighbors and prepared the tree using RaxML. Support values are calculated from 1000 rapid bootstrap replicates (BT) and BT values are indicated at branching points. Our test strains are marked in bold, E . coli K12 MG1655 was used as the...

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Main Authors: Srijana Mukhia (9025058), Anil Kumar (105720), Poonam Kumari (6175139), Rakshak Kumar (125841), Sanjay Kumar (8853)
Format: Still Image
Language:unknown
Published: 2022
Subjects:
Online Access:https://doi.org/10.1371/journal.pone.0261178.g006
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spelling ftsmithonian:oai:figshare.com:article/19021518 2023-05-15T14:04:45+02:00 Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool. Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) 2022-01-24T18:29:42Z https://doi.org/10.1371/journal.pone.0261178.g006 unknown https://figshare.com/articles/figure/Phylogenomic_tree_of_representative_i_Pseudomonas_i_strains_based_on_91_core_genes_using_the_UBCG_tool_/19021518 doi:10.1371/journal.pone.0261178.g006 CC BY 4.0 CC-BY Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could Image Figure 2022 ftsmithonian https://doi.org/10.1371/journal.pone.0261178.g006 2022-02-07T17:36:46Z The tool extracted 91 core genes from the genomes of nearest neighbors and prepared the tree using RaxML. Support values are calculated from 1000 rapid bootstrap replicates (BT) and BT values are indicated at branching points. Our test strains are marked in bold, E . coli K12 MG1655 was used as the outgroup organism. Still Image Antarc* Antarctica Unknown
institution Open Polar
collection Unknown
op_collection_id ftsmithonian
language unknown
topic Microbiology
Genetics
Biotechnology
Evolutionary Biology
Ecology
Marine Biology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
unique adaptive features
mesophilic control strain
extreme environmental conditions
96 hours compared
73 %) compared
showed taxonomic ambiguity
highest ani value
high ultraviolet radiations
div >< p
pseudomonas antarctica </
obtained eleven strains
pseudomonas </
p </
antarctica </
taxonomic assignment
dddh value
c radiations
fluorescens </
tolerance abilities
supraglacial site
supraglacial ice
sikkim himalaya
representative strains
radiation resistance
polyadaptational attributes
physiological findings
pamc 27494
microorganisms inhabiting
frequent freeze
four strains
diverse genera
current study
correct taxonomy
biotechnologically significant
based assays
associated genes
adaptational strategies
active enzymes
65 %)
05 could
spellingShingle Microbiology
Genetics
Biotechnology
Evolutionary Biology
Ecology
Marine Biology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
unique adaptive features
mesophilic control strain
extreme environmental conditions
96 hours compared
73 %) compared
showed taxonomic ambiguity
highest ani value
high ultraviolet radiations
div >< p
pseudomonas antarctica </
obtained eleven strains
pseudomonas </
p </
antarctica </
taxonomic assignment
dddh value
c radiations
fluorescens </
tolerance abilities
supraglacial site
supraglacial ice
sikkim himalaya
representative strains
radiation resistance
polyadaptational attributes
physiological findings
pamc 27494
microorganisms inhabiting
frequent freeze
four strains
diverse genera
current study
correct taxonomy
biotechnologically significant
based assays
associated genes
adaptational strategies
active enzymes
65 %)
05 could
Srijana Mukhia (9025058)
Anil Kumar (105720)
Poonam Kumari (6175139)
Rakshak Kumar (125841)
Sanjay Kumar (8853)
Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool.
topic_facet Microbiology
Genetics
Biotechnology
Evolutionary Biology
Ecology
Marine Biology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
unique adaptive features
mesophilic control strain
extreme environmental conditions
96 hours compared
73 %) compared
showed taxonomic ambiguity
highest ani value
high ultraviolet radiations
div >< p
pseudomonas antarctica </
obtained eleven strains
pseudomonas </
p </
antarctica </
taxonomic assignment
dddh value
c radiations
fluorescens </
tolerance abilities
supraglacial site
supraglacial ice
sikkim himalaya
representative strains
radiation resistance
polyadaptational attributes
physiological findings
pamc 27494
microorganisms inhabiting
frequent freeze
four strains
diverse genera
current study
correct taxonomy
biotechnologically significant
based assays
associated genes
adaptational strategies
active enzymes
65 %)
05 could
description The tool extracted 91 core genes from the genomes of nearest neighbors and prepared the tree using RaxML. Support values are calculated from 1000 rapid bootstrap replicates (BT) and BT values are indicated at branching points. Our test strains are marked in bold, E . coli K12 MG1655 was used as the outgroup organism.
format Still Image
author Srijana Mukhia (9025058)
Anil Kumar (105720)
Poonam Kumari (6175139)
Rakshak Kumar (125841)
Sanjay Kumar (8853)
author_facet Srijana Mukhia (9025058)
Anil Kumar (105720)
Poonam Kumari (6175139)
Rakshak Kumar (125841)
Sanjay Kumar (8853)
author_sort Srijana Mukhia (9025058)
title Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool.
title_short Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool.
title_full Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool.
title_fullStr Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool.
title_full_unstemmed Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool.
title_sort phylogenomic tree of representative pseudomonas strains based on 91 core genes using the ubcg tool.
publishDate 2022
url https://doi.org/10.1371/journal.pone.0261178.g006
genre Antarc*
Antarctica
genre_facet Antarc*
Antarctica
op_relation https://figshare.com/articles/figure/Phylogenomic_tree_of_representative_i_Pseudomonas_i_strains_based_on_91_core_genes_using_the_UBCG_tool_/19021518
doi:10.1371/journal.pone.0261178.g006
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pone.0261178.g006
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