Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool.
The tool extracted 91 core genes from the genomes of nearest neighbors and prepared the tree using RaxML. Support values are calculated from 1000 rapid bootstrap replicates (BT) and BT values are indicated at branching points. Our test strains are marked in bold, E . coli K12 MG1655 was used as the...
Main Authors: | , , , , |
---|---|
Format: | Still Image |
Language: | unknown |
Published: |
2022
|
Subjects: | |
Online Access: | https://doi.org/10.1371/journal.pone.0261178.g006 |
id |
ftsmithonian:oai:figshare.com:article/19021518 |
---|---|
record_format |
openpolar |
spelling |
ftsmithonian:oai:figshare.com:article/19021518 2023-05-15T14:04:45+02:00 Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool. Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) 2022-01-24T18:29:42Z https://doi.org/10.1371/journal.pone.0261178.g006 unknown https://figshare.com/articles/figure/Phylogenomic_tree_of_representative_i_Pseudomonas_i_strains_based_on_91_core_genes_using_the_UBCG_tool_/19021518 doi:10.1371/journal.pone.0261178.g006 CC BY 4.0 CC-BY Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could Image Figure 2022 ftsmithonian https://doi.org/10.1371/journal.pone.0261178.g006 2022-02-07T17:36:46Z The tool extracted 91 core genes from the genomes of nearest neighbors and prepared the tree using RaxML. Support values are calculated from 1000 rapid bootstrap replicates (BT) and BT values are indicated at branching points. Our test strains are marked in bold, E . coli K12 MG1655 was used as the outgroup organism. Still Image Antarc* Antarctica Unknown |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
ftsmithonian |
language |
unknown |
topic |
Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could |
spellingShingle |
Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool. |
topic_facet |
Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could |
description |
The tool extracted 91 core genes from the genomes of nearest neighbors and prepared the tree using RaxML. Support values are calculated from 1000 rapid bootstrap replicates (BT) and BT values are indicated at branching points. Our test strains are marked in bold, E . coli K12 MG1655 was used as the outgroup organism. |
format |
Still Image |
author |
Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) |
author_facet |
Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) |
author_sort |
Srijana Mukhia (9025058) |
title |
Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool. |
title_short |
Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool. |
title_full |
Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool. |
title_fullStr |
Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool. |
title_full_unstemmed |
Phylogenomic tree of representative Pseudomonas strains based on 91 core genes using the UBCG tool. |
title_sort |
phylogenomic tree of representative pseudomonas strains based on 91 core genes using the ubcg tool. |
publishDate |
2022 |
url |
https://doi.org/10.1371/journal.pone.0261178.g006 |
genre |
Antarc* Antarctica |
genre_facet |
Antarc* Antarctica |
op_relation |
https://figshare.com/articles/figure/Phylogenomic_tree_of_representative_i_Pseudomonas_i_strains_based_on_91_core_genes_using_the_UBCG_tool_/19021518 doi:10.1371/journal.pone.0261178.g006 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1371/journal.pone.0261178.g006 |
_version_ |
1766276014916239360 |