Maximum likelihood tree based on the partial 16S rRNA gene sequences of the 11 Pseudomonas strains and closely related validly published strains of the Pseudomonas genus obtained from NCBI database.

The 11 Pseudomonas strains show clustering with both P . fluorescens and P . antarctica . E . coli K12 MG1655 was used as the outgroup organism. The tree was constructed using MEGA X software based on the Kimura 2-parameter model with 1000 bootstrap replications, and the scale bar corresponds to the...

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Main Authors: Srijana Mukhia (9025058), Anil Kumar (105720), Poonam Kumari (6175139), Rakshak Kumar (125841), Sanjay Kumar (8853)
Format: Still Image
Language:unknown
Published: 2022
Subjects:
Online Access:https://doi.org/10.1371/journal.pone.0261178.g002
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spelling ftsmithonian:oai:figshare.com:article/19021497 2023-05-15T14:04:45+02:00 Maximum likelihood tree based on the partial 16S rRNA gene sequences of the 11 Pseudomonas strains and closely related validly published strains of the Pseudomonas genus obtained from NCBI database. Srijana Mukhia (9025058) Anil Kumar (105720) Poonam Kumari (6175139) Rakshak Kumar (125841) Sanjay Kumar (8853) 2022-01-24T18:29:42Z https://doi.org/10.1371/journal.pone.0261178.g002 unknown https://figshare.com/articles/figure/Maximum_likelihood_tree_based_on_the_partial_16S_rRNA_gene_sequences_of_the_11_i_Pseudomonas_i_strains_and_closely_related_validly_published_strains_of_the_i_Pseudomonas_i_genus_obtained_from_NCBI_database_/19021497 doi:10.1371/journal.pone.0261178.g002 CC BY 4.0 CC-BY Microbiology Genetics Biotechnology Evolutionary Biology Ecology Marine Biology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified unique adaptive features mesophilic control strain extreme environmental conditions 96 hours compared 73 %) compared showed taxonomic ambiguity highest ani value high ultraviolet radiations div >< p pseudomonas antarctica </ obtained eleven strains pseudomonas </ p </ antarctica </ taxonomic assignment dddh value c radiations fluorescens </ tolerance abilities supraglacial site supraglacial ice sikkim himalaya representative strains radiation resistance polyadaptational attributes physiological findings pamc 27494 microorganisms inhabiting frequent freeze four strains diverse genera current study correct taxonomy biotechnologically significant based assays associated genes adaptational strategies active enzymes 65 %) 05 could Image Figure 2022 ftsmithonian https://doi.org/10.1371/journal.pone.0261178.g002 2022-02-07T17:36:48Z The 11 Pseudomonas strains show clustering with both P . fluorescens and P . antarctica . E . coli K12 MG1655 was used as the outgroup organism. The tree was constructed using MEGA X software based on the Kimura 2-parameter model with 1000 bootstrap replications, and the scale bar corresponds to the average number of nucleotide substitutions per site. Accession numbers are given in parenthesis. Still Image Antarc* Antarctica Unknown
institution Open Polar
collection Unknown
op_collection_id ftsmithonian
language unknown
topic Microbiology
Genetics
Biotechnology
Evolutionary Biology
Ecology
Marine Biology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
unique adaptive features
mesophilic control strain
extreme environmental conditions
96 hours compared
73 %) compared
showed taxonomic ambiguity
highest ani value
high ultraviolet radiations
div >< p
pseudomonas antarctica </
obtained eleven strains
pseudomonas </
p </
antarctica </
taxonomic assignment
dddh value
c radiations
fluorescens </
tolerance abilities
supraglacial site
supraglacial ice
sikkim himalaya
representative strains
radiation resistance
polyadaptational attributes
physiological findings
pamc 27494
microorganisms inhabiting
frequent freeze
four strains
diverse genera
current study
correct taxonomy
biotechnologically significant
based assays
associated genes
adaptational strategies
active enzymes
65 %)
05 could
spellingShingle Microbiology
Genetics
Biotechnology
Evolutionary Biology
Ecology
Marine Biology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
unique adaptive features
mesophilic control strain
extreme environmental conditions
96 hours compared
73 %) compared
showed taxonomic ambiguity
highest ani value
high ultraviolet radiations
div >< p
pseudomonas antarctica </
obtained eleven strains
pseudomonas </
p </
antarctica </
taxonomic assignment
dddh value
c radiations
fluorescens </
tolerance abilities
supraglacial site
supraglacial ice
sikkim himalaya
representative strains
radiation resistance
polyadaptational attributes
physiological findings
pamc 27494
microorganisms inhabiting
frequent freeze
four strains
diverse genera
current study
correct taxonomy
biotechnologically significant
based assays
associated genes
adaptational strategies
active enzymes
65 %)
05 could
Srijana Mukhia (9025058)
Anil Kumar (105720)
Poonam Kumari (6175139)
Rakshak Kumar (125841)
Sanjay Kumar (8853)
Maximum likelihood tree based on the partial 16S rRNA gene sequences of the 11 Pseudomonas strains and closely related validly published strains of the Pseudomonas genus obtained from NCBI database.
topic_facet Microbiology
Genetics
Biotechnology
Evolutionary Biology
Ecology
Marine Biology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
unique adaptive features
mesophilic control strain
extreme environmental conditions
96 hours compared
73 %) compared
showed taxonomic ambiguity
highest ani value
high ultraviolet radiations
div >< p
pseudomonas antarctica </
obtained eleven strains
pseudomonas </
p </
antarctica </
taxonomic assignment
dddh value
c radiations
fluorescens </
tolerance abilities
supraglacial site
supraglacial ice
sikkim himalaya
representative strains
radiation resistance
polyadaptational attributes
physiological findings
pamc 27494
microorganisms inhabiting
frequent freeze
four strains
diverse genera
current study
correct taxonomy
biotechnologically significant
based assays
associated genes
adaptational strategies
active enzymes
65 %)
05 could
description The 11 Pseudomonas strains show clustering with both P . fluorescens and P . antarctica . E . coli K12 MG1655 was used as the outgroup organism. The tree was constructed using MEGA X software based on the Kimura 2-parameter model with 1000 bootstrap replications, and the scale bar corresponds to the average number of nucleotide substitutions per site. Accession numbers are given in parenthesis.
format Still Image
author Srijana Mukhia (9025058)
Anil Kumar (105720)
Poonam Kumari (6175139)
Rakshak Kumar (125841)
Sanjay Kumar (8853)
author_facet Srijana Mukhia (9025058)
Anil Kumar (105720)
Poonam Kumari (6175139)
Rakshak Kumar (125841)
Sanjay Kumar (8853)
author_sort Srijana Mukhia (9025058)
title Maximum likelihood tree based on the partial 16S rRNA gene sequences of the 11 Pseudomonas strains and closely related validly published strains of the Pseudomonas genus obtained from NCBI database.
title_short Maximum likelihood tree based on the partial 16S rRNA gene sequences of the 11 Pseudomonas strains and closely related validly published strains of the Pseudomonas genus obtained from NCBI database.
title_full Maximum likelihood tree based on the partial 16S rRNA gene sequences of the 11 Pseudomonas strains and closely related validly published strains of the Pseudomonas genus obtained from NCBI database.
title_fullStr Maximum likelihood tree based on the partial 16S rRNA gene sequences of the 11 Pseudomonas strains and closely related validly published strains of the Pseudomonas genus obtained from NCBI database.
title_full_unstemmed Maximum likelihood tree based on the partial 16S rRNA gene sequences of the 11 Pseudomonas strains and closely related validly published strains of the Pseudomonas genus obtained from NCBI database.
title_sort maximum likelihood tree based on the partial 16s rrna gene sequences of the 11 pseudomonas strains and closely related validly published strains of the pseudomonas genus obtained from ncbi database.
publishDate 2022
url https://doi.org/10.1371/journal.pone.0261178.g002
genre Antarc*
Antarctica
genre_facet Antarc*
Antarctica
op_relation https://figshare.com/articles/figure/Maximum_likelihood_tree_based_on_the_partial_16S_rRNA_gene_sequences_of_the_11_i_Pseudomonas_i_strains_and_closely_related_validly_published_strains_of_the_i_Pseudomonas_i_genus_obtained_from_NCBI_database_/19021497
doi:10.1371/journal.pone.0261178.g002
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pone.0261178.g002
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