Chromosome LG15_El12.1–15.1 Fst peak.

• Main Authors: Kris A. Christensen (3797896), Eric B. Rondeau (8726934), Dionne Sakhrani (809148), Carlo A. Biagi (9579561), Hollie Johnson (11851615), Jay Joshi (8283645), Anne-Marie Flores (9579564), Sreeja Leelakumari (11851618), Richard Moore (2297), Pawan K. Pandoh (11851621), Ruth E. Withler (7852571), Terry D. Beacham (2855522), Rosalind A. Leggatt (11851624), Carolyn M. Tarpey (11851627), Lisa W. Seeb (8135907), James E. Seeb (8135904), Steven J. M. Jones (9709382), Robert H. Devlin (7852568), Ben F. Koop (316166)
• Format: Still Image
• Language: unknown
• Published: 2021
• Subjects: Microbiology; Genetics; Evolutionary Biology; Ecology; Inorganic Chemistry; Science Policy; Environmental Sciences not elsewhere classified; Biological Sciences not elsewhere classified; western pacific ocean; six canadian rivers; one japanese river; oncorhynchus gorbuscha </; reference genome assemblies; year life history; salmon fishery worldwide; largest fst peak; year genome near; pink salmon (<; year temporal isolation; div >< p; could influence speciation; fst peaks may; pink salmon genome; pink salmon; whole genome; genome influenced; identified peaks; genetic isolation; spawn either; sequencing data; reduced recombination; pairs long; organ development; multiple centromeres; mostly associated; large proportion; immune function; genomic consequences; genetic drift; genes related; commercial value; >) adults; Pacific; Oncorhynchus gorbuscha; Pink salmon
• Online Access: https://doi.org/10.1371/journal.pone.0255752.g006

A) A Manhattan plot of 10 kbp sliding-window Fst values between odd and even-year pink salmon lineages on chromosome LG15_El12.1–15.1. B) Genotypes visualized in IGV. Each row represents an individual pink salmon and each column represents a nucleotide variant (dark blue–homozygous reference, light blue–heterozygous reference, green–homozygous alternative, and white–missing genotype). Individuals were sorted by year-class (shown on the right) and then by assigned genotype (shown on the left). C) Counts of genotypes of the chromosomal polymorphism based on manual genotyping.