Summary: | A) A Manhattan plot of 10 kbp sliding-window Fst values between odd and even-year pink salmon lineages on chromosome LG15_El12.1–15.1. B) Genotypes visualized in IGV. Each row represents an individual pink salmon and each column represents a nucleotide variant (dark blue–homozygous reference, light blue–heterozygous reference, green–homozygous alternative, and white–missing genotype). Individuals were sorted by year-class (shown on the right) and then by assigned genotype (shown on the left). C) Counts of genotypes of the chromosomal polymorphism based on manual genotyping.
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