Genome-wide divergence between odd and even-year pink salmon lineages.

A Manhattan plot of eigenGWAS results, with chromosome positions on the x-axis and p-values (corrected for genetic drift using the genomic inflation factor) on the y-axis to identify regions of the genome potentially under selection. The red horizontal line represents a Bonferroni correction at ɑ =...

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Main Authors: Kris A. Christensen (3797896), Eric B. Rondeau (8726934), Dionne Sakhrani (809148), Carlo A. Biagi (9579561), Hollie Johnson (11851615), Jay Joshi (8283645), Anne-Marie Flores (9579564), Sreeja Leelakumari (11851618), Richard Moore (2297), Pawan K. Pandoh (11851621), Ruth E. Withler (7852571), Terry D. Beacham (2855522), Rosalind A. Leggatt (11851624), Carolyn M. Tarpey (11851627), Lisa W. Seeb (8135907), James E. Seeb (8135904), Steven J. M. Jones (9709382), Robert H. Devlin (7852568), Ben F. Koop (316166)
Format: Still Image
Language:unknown
Published: 2021
Subjects:
Online Access:https://doi.org/10.1371/journal.pone.0255752.g005
id ftsmithonian:oai:figshare.com:article/17266006
record_format openpolar
spelling ftsmithonian:oai:figshare.com:article/17266006 2023-05-15T17:52:51+02:00 Genome-wide divergence between odd and even-year pink salmon lineages. Kris A. Christensen (3797896) Eric B. Rondeau (8726934) Dionne Sakhrani (809148) Carlo A. Biagi (9579561) Hollie Johnson (11851615) Jay Joshi (8283645) Anne-Marie Flores (9579564) Sreeja Leelakumari (11851618) Richard Moore (2297) Pawan K. Pandoh (11851621) Ruth E. Withler (7852571) Terry D. Beacham (2855522) Rosalind A. Leggatt (11851624) Carolyn M. Tarpey (11851627) Lisa W. Seeb (8135907) James E. Seeb (8135904) Steven J. M. Jones (9709382) Robert H. Devlin (7852568) Ben F. Koop (316166) 2021-12-17T18:44:57Z https://doi.org/10.1371/journal.pone.0255752.g005 unknown https://figshare.com/articles/figure/Genome-wide_divergence_between_odd_and_even-year_pink_salmon_lineages_/17266006 doi:10.1371/journal.pone.0255752.g005 CC BY 4.0 CC-BY Microbiology Genetics Evolutionary Biology Ecology Inorganic Chemistry Science Policy Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified western pacific ocean six canadian rivers one japanese river oncorhynchus gorbuscha </ reference genome assemblies year life history salmon fishery worldwide largest fst peak year genome near pink salmon (< year temporal isolation div >< p could influence speciation fst peaks may pink salmon genome pink salmon whole genome genome influenced identified peaks genetic isolation spawn either sequencing data reduced recombination pairs long organ development multiple centromeres mostly associated large proportion immune function genomic consequences genetic drift genes related commercial value >) adults Image Figure 2021 ftsmithonian https://doi.org/10.1371/journal.pone.0255752.g005 2021-12-19T19:12:42Z A Manhattan plot of eigenGWAS results, with chromosome positions on the x-axis and p-values (corrected for genetic drift using the genomic inflation factor) on the y-axis to identify regions of the genome potentially under selection. The red horizontal line represents a Bonferroni correction at ɑ = 0.01 and the blue line at ɑ = 0.05. All positions are from the odd-year genome assembly. Still Image Oncorhynchus gorbuscha Pink salmon Unknown Pacific The ''Y'' ENVELOPE(-112.453,-112.453,57.591,57.591)
institution Open Polar
collection Unknown
op_collection_id ftsmithonian
language unknown
topic Microbiology
Genetics
Evolutionary Biology
Ecology
Inorganic Chemistry
Science Policy
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
western pacific ocean
six canadian rivers
one japanese river
oncorhynchus gorbuscha </
reference genome assemblies
year life history
salmon fishery worldwide
largest fst peak
year genome near
pink salmon (<
year temporal isolation
div >< p
could influence speciation
fst peaks may
pink salmon genome
pink salmon
whole genome
genome influenced
identified peaks
genetic isolation
spawn either
sequencing data
reduced recombination
pairs long
organ development
multiple centromeres
mostly associated
large proportion
immune function
genomic consequences
genetic drift
genes related
commercial value
>) adults
spellingShingle Microbiology
Genetics
Evolutionary Biology
Ecology
Inorganic Chemistry
Science Policy
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
western pacific ocean
six canadian rivers
one japanese river
oncorhynchus gorbuscha </
reference genome assemblies
year life history
salmon fishery worldwide
largest fst peak
year genome near
pink salmon (<
year temporal isolation
div >< p
could influence speciation
fst peaks may
pink salmon genome
pink salmon
whole genome
genome influenced
identified peaks
genetic isolation
spawn either
sequencing data
reduced recombination
pairs long
organ development
multiple centromeres
mostly associated
large proportion
immune function
genomic consequences
genetic drift
genes related
commercial value
>) adults
Kris A. Christensen (3797896)
Eric B. Rondeau (8726934)
Dionne Sakhrani (809148)
Carlo A. Biagi (9579561)
Hollie Johnson (11851615)
Jay Joshi (8283645)
Anne-Marie Flores (9579564)
Sreeja Leelakumari (11851618)
Richard Moore (2297)
Pawan K. Pandoh (11851621)
Ruth E. Withler (7852571)
Terry D. Beacham (2855522)
Rosalind A. Leggatt (11851624)
Carolyn M. Tarpey (11851627)
Lisa W. Seeb (8135907)
James E. Seeb (8135904)
Steven J. M. Jones (9709382)
Robert H. Devlin (7852568)
Ben F. Koop (316166)
Genome-wide divergence between odd and even-year pink salmon lineages.
topic_facet Microbiology
Genetics
Evolutionary Biology
Ecology
Inorganic Chemistry
Science Policy
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
western pacific ocean
six canadian rivers
one japanese river
oncorhynchus gorbuscha </
reference genome assemblies
year life history
salmon fishery worldwide
largest fst peak
year genome near
pink salmon (<
year temporal isolation
div >< p
could influence speciation
fst peaks may
pink salmon genome
pink salmon
whole genome
genome influenced
identified peaks
genetic isolation
spawn either
sequencing data
reduced recombination
pairs long
organ development
multiple centromeres
mostly associated
large proportion
immune function
genomic consequences
genetic drift
genes related
commercial value
>) adults
description A Manhattan plot of eigenGWAS results, with chromosome positions on the x-axis and p-values (corrected for genetic drift using the genomic inflation factor) on the y-axis to identify regions of the genome potentially under selection. The red horizontal line represents a Bonferroni correction at ɑ = 0.01 and the blue line at ɑ = 0.05. All positions are from the odd-year genome assembly.
format Still Image
author Kris A. Christensen (3797896)
Eric B. Rondeau (8726934)
Dionne Sakhrani (809148)
Carlo A. Biagi (9579561)
Hollie Johnson (11851615)
Jay Joshi (8283645)
Anne-Marie Flores (9579564)
Sreeja Leelakumari (11851618)
Richard Moore (2297)
Pawan K. Pandoh (11851621)
Ruth E. Withler (7852571)
Terry D. Beacham (2855522)
Rosalind A. Leggatt (11851624)
Carolyn M. Tarpey (11851627)
Lisa W. Seeb (8135907)
James E. Seeb (8135904)
Steven J. M. Jones (9709382)
Robert H. Devlin (7852568)
Ben F. Koop (316166)
author_facet Kris A. Christensen (3797896)
Eric B. Rondeau (8726934)
Dionne Sakhrani (809148)
Carlo A. Biagi (9579561)
Hollie Johnson (11851615)
Jay Joshi (8283645)
Anne-Marie Flores (9579564)
Sreeja Leelakumari (11851618)
Richard Moore (2297)
Pawan K. Pandoh (11851621)
Ruth E. Withler (7852571)
Terry D. Beacham (2855522)
Rosalind A. Leggatt (11851624)
Carolyn M. Tarpey (11851627)
Lisa W. Seeb (8135907)
James E. Seeb (8135904)
Steven J. M. Jones (9709382)
Robert H. Devlin (7852568)
Ben F. Koop (316166)
author_sort Kris A. Christensen (3797896)
title Genome-wide divergence between odd and even-year pink salmon lineages.
title_short Genome-wide divergence between odd and even-year pink salmon lineages.
title_full Genome-wide divergence between odd and even-year pink salmon lineages.
title_fullStr Genome-wide divergence between odd and even-year pink salmon lineages.
title_full_unstemmed Genome-wide divergence between odd and even-year pink salmon lineages.
title_sort genome-wide divergence between odd and even-year pink salmon lineages.
publishDate 2021
url https://doi.org/10.1371/journal.pone.0255752.g005
long_lat ENVELOPE(-112.453,-112.453,57.591,57.591)
geographic Pacific
The ''Y''
geographic_facet Pacific
The ''Y''
genre Oncorhynchus gorbuscha
Pink salmon
genre_facet Oncorhynchus gorbuscha
Pink salmon
op_relation https://figshare.com/articles/figure/Genome-wide_divergence_between_odd_and_even-year_pink_salmon_lineages_/17266006
doi:10.1371/journal.pone.0255752.g005
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pone.0255752.g005
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