Comparison of the odd and even-year genome assemblies.

A chromosome-by-chromosome comparison of the odd and even-year genome assemblies. Each slide has two figures shown side-by-side with the odd-year scaffolds aligned to the corresponding odd-year chromosome on the left and the even-year scaffolds aligned to the corresponding odd-year chromosome. CHROM...

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Main Authors: Kris A. Christensen (3797896), Eric B. Rondeau (8726934), Dionne Sakhrani (809148), Carlo A. Biagi (9579561), Hollie Johnson (11851615), Jay Joshi (8283645), Anne-Marie Flores (9579564), Sreeja Leelakumari (11851618), Richard Moore (2297), Pawan K. Pandoh (11851621), Ruth E. Withler (7852571), Terry D. Beacham (2855522), Rosalind A. Leggatt (11851624), Carolyn M. Tarpey (11851627), Lisa W. Seeb (8135907), James E. Seeb (8135904), Steven J. M. Jones (9709382), Robert H. Devlin (7852568), Ben F. Koop (316166)
Format: Other Non-Article Part of Journal/Newspaper
Language:unknown
Published: 2021
Subjects:
Online Access:https://doi.org/10.1371/journal.pone.0255752.s002
id ftsmithonian:oai:figshare.com:article/17265970
record_format openpolar
spelling ftsmithonian:oai:figshare.com:article/17265970 2023-05-15T17:52:51+02:00 Comparison of the odd and even-year genome assemblies. Kris A. Christensen (3797896) Eric B. Rondeau (8726934) Dionne Sakhrani (809148) Carlo A. Biagi (9579561) Hollie Johnson (11851615) Jay Joshi (8283645) Anne-Marie Flores (9579564) Sreeja Leelakumari (11851618) Richard Moore (2297) Pawan K. Pandoh (11851621) Ruth E. Withler (7852571) Terry D. Beacham (2855522) Rosalind A. Leggatt (11851624) Carolyn M. Tarpey (11851627) Lisa W. Seeb (8135907) James E. Seeb (8135904) Steven J. M. Jones (9709382) Robert H. Devlin (7852568) Ben F. Koop (316166) 2021-12-17T18:44:57Z https://doi.org/10.1371/journal.pone.0255752.s002 unknown https://figshare.com/articles/journal_contribution/Comparison_of_the_odd_and_even-year_genome_assemblies_/17265970 doi:10.1371/journal.pone.0255752.s002 CC BY 4.0 CC-BY Microbiology Genetics Evolutionary Biology Ecology Inorganic Chemistry Science Policy Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified western pacific ocean six canadian rivers one japanese river oncorhynchus gorbuscha </ reference genome assemblies year life history salmon fishery worldwide largest fst peak year genome near pink salmon (< year temporal isolation div >< p could influence speciation fst peaks may pink salmon genome pink salmon whole genome genome influenced identified peaks genetic isolation spawn either sequencing data reduced recombination pairs long organ development multiple centromeres mostly associated large proportion immune function genomic consequences genetic drift genes related commercial value >) adults Text Journal contribution 2021 ftsmithonian https://doi.org/10.1371/journal.pone.0255752.s002 2021-12-19T19:12:44Z A chromosome-by-chromosome comparison of the odd and even-year genome assemblies. Each slide has two figures shown side-by-side with the odd-year scaffolds aligned to the corresponding odd-year chromosome on the left and the even-year scaffolds aligned to the corresponding odd-year chromosome. CHROMEISTER [ 111 ] was used to align the scaffolds to the chromosomes. On the y-axes, the scaffold number (in descending order from the top) is shown, with dashed lines delineating the scaffold alignments. The chromosome position is shown on the x-axes. The y-axes are not equivalent between figures, but the x-axes are. (PDF) Other Non-Article Part of Journal/Newspaper Oncorhynchus gorbuscha Pink salmon Unknown Pacific The ''Y'' ENVELOPE(-112.453,-112.453,57.591,57.591)
institution Open Polar
collection Unknown
op_collection_id ftsmithonian
language unknown
topic Microbiology
Genetics
Evolutionary Biology
Ecology
Inorganic Chemistry
Science Policy
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
western pacific ocean
six canadian rivers
one japanese river
oncorhynchus gorbuscha </
reference genome assemblies
year life history
salmon fishery worldwide
largest fst peak
year genome near
pink salmon (<
year temporal isolation
div >< p
could influence speciation
fst peaks may
pink salmon genome
pink salmon
whole genome
genome influenced
identified peaks
genetic isolation
spawn either
sequencing data
reduced recombination
pairs long
organ development
multiple centromeres
mostly associated
large proportion
immune function
genomic consequences
genetic drift
genes related
commercial value
>) adults
spellingShingle Microbiology
Genetics
Evolutionary Biology
Ecology
Inorganic Chemistry
Science Policy
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
western pacific ocean
six canadian rivers
one japanese river
oncorhynchus gorbuscha </
reference genome assemblies
year life history
salmon fishery worldwide
largest fst peak
year genome near
pink salmon (<
year temporal isolation
div >< p
could influence speciation
fst peaks may
pink salmon genome
pink salmon
whole genome
genome influenced
identified peaks
genetic isolation
spawn either
sequencing data
reduced recombination
pairs long
organ development
multiple centromeres
mostly associated
large proportion
immune function
genomic consequences
genetic drift
genes related
commercial value
>) adults
Kris A. Christensen (3797896)
Eric B. Rondeau (8726934)
Dionne Sakhrani (809148)
Carlo A. Biagi (9579561)
Hollie Johnson (11851615)
Jay Joshi (8283645)
Anne-Marie Flores (9579564)
Sreeja Leelakumari (11851618)
Richard Moore (2297)
Pawan K. Pandoh (11851621)
Ruth E. Withler (7852571)
Terry D. Beacham (2855522)
Rosalind A. Leggatt (11851624)
Carolyn M. Tarpey (11851627)
Lisa W. Seeb (8135907)
James E. Seeb (8135904)
Steven J. M. Jones (9709382)
Robert H. Devlin (7852568)
Ben F. Koop (316166)
Comparison of the odd and even-year genome assemblies.
topic_facet Microbiology
Genetics
Evolutionary Biology
Ecology
Inorganic Chemistry
Science Policy
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
western pacific ocean
six canadian rivers
one japanese river
oncorhynchus gorbuscha </
reference genome assemblies
year life history
salmon fishery worldwide
largest fst peak
year genome near
pink salmon (<
year temporal isolation
div >< p
could influence speciation
fst peaks may
pink salmon genome
pink salmon
whole genome
genome influenced
identified peaks
genetic isolation
spawn either
sequencing data
reduced recombination
pairs long
organ development
multiple centromeres
mostly associated
large proportion
immune function
genomic consequences
genetic drift
genes related
commercial value
>) adults
description A chromosome-by-chromosome comparison of the odd and even-year genome assemblies. Each slide has two figures shown side-by-side with the odd-year scaffolds aligned to the corresponding odd-year chromosome on the left and the even-year scaffolds aligned to the corresponding odd-year chromosome. CHROMEISTER [ 111 ] was used to align the scaffolds to the chromosomes. On the y-axes, the scaffold number (in descending order from the top) is shown, with dashed lines delineating the scaffold alignments. The chromosome position is shown on the x-axes. The y-axes are not equivalent between figures, but the x-axes are. (PDF)
format Other Non-Article Part of Journal/Newspaper
author Kris A. Christensen (3797896)
Eric B. Rondeau (8726934)
Dionne Sakhrani (809148)
Carlo A. Biagi (9579561)
Hollie Johnson (11851615)
Jay Joshi (8283645)
Anne-Marie Flores (9579564)
Sreeja Leelakumari (11851618)
Richard Moore (2297)
Pawan K. Pandoh (11851621)
Ruth E. Withler (7852571)
Terry D. Beacham (2855522)
Rosalind A. Leggatt (11851624)
Carolyn M. Tarpey (11851627)
Lisa W. Seeb (8135907)
James E. Seeb (8135904)
Steven J. M. Jones (9709382)
Robert H. Devlin (7852568)
Ben F. Koop (316166)
author_facet Kris A. Christensen (3797896)
Eric B. Rondeau (8726934)
Dionne Sakhrani (809148)
Carlo A. Biagi (9579561)
Hollie Johnson (11851615)
Jay Joshi (8283645)
Anne-Marie Flores (9579564)
Sreeja Leelakumari (11851618)
Richard Moore (2297)
Pawan K. Pandoh (11851621)
Ruth E. Withler (7852571)
Terry D. Beacham (2855522)
Rosalind A. Leggatt (11851624)
Carolyn M. Tarpey (11851627)
Lisa W. Seeb (8135907)
James E. Seeb (8135904)
Steven J. M. Jones (9709382)
Robert H. Devlin (7852568)
Ben F. Koop (316166)
author_sort Kris A. Christensen (3797896)
title Comparison of the odd and even-year genome assemblies.
title_short Comparison of the odd and even-year genome assemblies.
title_full Comparison of the odd and even-year genome assemblies.
title_fullStr Comparison of the odd and even-year genome assemblies.
title_full_unstemmed Comparison of the odd and even-year genome assemblies.
title_sort comparison of the odd and even-year genome assemblies.
publishDate 2021
url https://doi.org/10.1371/journal.pone.0255752.s002
long_lat ENVELOPE(-112.453,-112.453,57.591,57.591)
geographic Pacific
The ''Y''
geographic_facet Pacific
The ''Y''
genre Oncorhynchus gorbuscha
Pink salmon
genre_facet Oncorhynchus gorbuscha
Pink salmon
op_relation https://figshare.com/articles/journal_contribution/Comparison_of_the_odd_and_even-year_genome_assemblies_/17265970
doi:10.1371/journal.pone.0255752.s002
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pone.0255752.s002
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