Relative synonymous codon usage (RSCU) in each Penstemon plastome.

Codons with moderate to high preference, RSCU values above 1.2, for each amino acid are in bold text. Only leucine, arginine, and serine have more than one codon with high preferences. Most amino acids with two codons had a preference for one codon, the exceptions being cysteine, lysine, and asparag...

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Main Authors: Jason M. Stettler (5488874), Mikel R. Stevens (11841089), Lindsey M. Meservey (11841092), W. Wesley Crump (11841095), Jed D. Grow (11841098), Sydney J. Porter (11841101), L. Stephen Love (11841104), Peter J. Maughan (8887367), Eric N. Jellen (8887364)
Format: Other Non-Article Part of Journal/Newspaper
Language:unknown
Published: 2021
Subjects:
Online Access:https://doi.org/10.1371/journal.pone.0261143.s004
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spelling ftsmithonian:oai:figshare.com:article/17208695 2023-05-15T15:02:57+02:00 Relative synonymous codon usage (RSCU) in each Penstemon plastome. Jason M. Stettler (5488874) Mikel R. Stevens (11841089) Lindsey M. Meservey (11841092) W. Wesley Crump (11841095) Jed D. Grow (11841098) Sydney J. Porter (11841101) L. Stephen Love (11841104) Peter J. Maughan (8887367) Eric N. Jellen (8887364) 2021-12-15T18:37:53Z https://doi.org/10.1371/journal.pone.0261143.s004 unknown https://figshare.com/articles/journal_contribution/Relative_synonymous_codon_usage_RSCU_in_each_i_Penstemon_i_plastome_/17208695 doi:10.1371/journal.pone.0261143.s004 CC BY 4.0 CC-BY Genetics Evolutionary Biology Ecology Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified recent geologic origin provides greater accuracy old world taxa monophyletic clade sister higher nodal support div >< p analyzing phylogenetic relationships plastome based phylogeny complete plastome sequences resolving problematic clades improving phylogenetic resolution concatenated chloroplast sequences six subgenera occupying plastome based phylogenies concatenated sequences phylogenies based major clades improves resolution temperate grasslands scrophulariaceae </ rps2 </ rpoc2 </ rbcl </ rapid rate psba </ psaa </ pleistocene transition plastid genomes plantaginaceae </ perennial forbs penstemon </ ndhf </ matk </ lamiales using lamiales order arid deserts arctic tundra alpine meadows Text Journal contribution 2021 ftsmithonian https://doi.org/10.1371/journal.pone.0261143.s004 2021-12-19T19:25:10Z Codons with moderate to high preference, RSCU values above 1.2, for each amino acid are in bold text. Only leucine, arginine, and serine have more than one codon with high preferences. Most amino acids with two codons had a preference for one codon, the exceptions being cysteine, lysine, and asparagine. (DOCX) Other Non-Article Part of Journal/Newspaper Arctic Tundra Unknown Arctic
institution Open Polar
collection Unknown
op_collection_id ftsmithonian
language unknown
topic Genetics
Evolutionary Biology
Ecology
Plant Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
recent geologic origin
provides greater accuracy
old world taxa
monophyletic clade sister
higher nodal support
div >< p
analyzing phylogenetic relationships
plastome based phylogeny
complete plastome sequences
resolving problematic clades
improving phylogenetic resolution
concatenated chloroplast sequences
six subgenera occupying
plastome based phylogenies
concatenated sequences
phylogenies based
major clades
improves resolution
temperate grasslands
scrophulariaceae </
rps2 </
rpoc2 </
rbcl </
rapid rate
psba </
psaa </
pleistocene transition
plastid genomes
plantaginaceae </
perennial forbs
penstemon </
ndhf </
matk </
lamiales using
lamiales order
arid deserts
arctic tundra
alpine meadows
spellingShingle Genetics
Evolutionary Biology
Ecology
Plant Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
recent geologic origin
provides greater accuracy
old world taxa
monophyletic clade sister
higher nodal support
div >< p
analyzing phylogenetic relationships
plastome based phylogeny
complete plastome sequences
resolving problematic clades
improving phylogenetic resolution
concatenated chloroplast sequences
six subgenera occupying
plastome based phylogenies
concatenated sequences
phylogenies based
major clades
improves resolution
temperate grasslands
scrophulariaceae </
rps2 </
rpoc2 </
rbcl </
rapid rate
psba </
psaa </
pleistocene transition
plastid genomes
plantaginaceae </
perennial forbs
penstemon </
ndhf </
matk </
lamiales using
lamiales order
arid deserts
arctic tundra
alpine meadows
Jason M. Stettler (5488874)
Mikel R. Stevens (11841089)
Lindsey M. Meservey (11841092)
W. Wesley Crump (11841095)
Jed D. Grow (11841098)
Sydney J. Porter (11841101)
L. Stephen Love (11841104)
Peter J. Maughan (8887367)
Eric N. Jellen (8887364)
Relative synonymous codon usage (RSCU) in each Penstemon plastome.
topic_facet Genetics
Evolutionary Biology
Ecology
Plant Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
recent geologic origin
provides greater accuracy
old world taxa
monophyletic clade sister
higher nodal support
div >< p
analyzing phylogenetic relationships
plastome based phylogeny
complete plastome sequences
resolving problematic clades
improving phylogenetic resolution
concatenated chloroplast sequences
six subgenera occupying
plastome based phylogenies
concatenated sequences
phylogenies based
major clades
improves resolution
temperate grasslands
scrophulariaceae </
rps2 </
rpoc2 </
rbcl </
rapid rate
psba </
psaa </
pleistocene transition
plastid genomes
plantaginaceae </
perennial forbs
penstemon </
ndhf </
matk </
lamiales using
lamiales order
arid deserts
arctic tundra
alpine meadows
description Codons with moderate to high preference, RSCU values above 1.2, for each amino acid are in bold text. Only leucine, arginine, and serine have more than one codon with high preferences. Most amino acids with two codons had a preference for one codon, the exceptions being cysteine, lysine, and asparagine. (DOCX)
format Other Non-Article Part of Journal/Newspaper
author Jason M. Stettler (5488874)
Mikel R. Stevens (11841089)
Lindsey M. Meservey (11841092)
W. Wesley Crump (11841095)
Jed D. Grow (11841098)
Sydney J. Porter (11841101)
L. Stephen Love (11841104)
Peter J. Maughan (8887367)
Eric N. Jellen (8887364)
author_facet Jason M. Stettler (5488874)
Mikel R. Stevens (11841089)
Lindsey M. Meservey (11841092)
W. Wesley Crump (11841095)
Jed D. Grow (11841098)
Sydney J. Porter (11841101)
L. Stephen Love (11841104)
Peter J. Maughan (8887367)
Eric N. Jellen (8887364)
author_sort Jason M. Stettler (5488874)
title Relative synonymous codon usage (RSCU) in each Penstemon plastome.
title_short Relative synonymous codon usage (RSCU) in each Penstemon plastome.
title_full Relative synonymous codon usage (RSCU) in each Penstemon plastome.
title_fullStr Relative synonymous codon usage (RSCU) in each Penstemon plastome.
title_full_unstemmed Relative synonymous codon usage (RSCU) in each Penstemon plastome.
title_sort relative synonymous codon usage (rscu) in each penstemon plastome.
publishDate 2021
url https://doi.org/10.1371/journal.pone.0261143.s004
geographic Arctic
geographic_facet Arctic
genre Arctic
Tundra
genre_facet Arctic
Tundra
op_relation https://figshare.com/articles/journal_contribution/Relative_synonymous_codon_usage_RSCU_in_each_i_Penstemon_i_plastome_/17208695
doi:10.1371/journal.pone.0261143.s004
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pone.0261143.s004
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