Relative synonymous codon usage (RSCU) in each Penstemon plastome.
Codons with moderate to high preference, RSCU values above 1.2, for each amino acid are in bold text. Only leucine, arginine, and serine have more than one codon with high preferences. Most amino acids with two codons had a preference for one codon, the exceptions being cysteine, lysine, and asparag...
Main Authors: | , , , , , , , , |
---|---|
Format: | Other Non-Article Part of Journal/Newspaper |
Language: | unknown |
Published: |
2021
|
Subjects: | |
Online Access: | https://doi.org/10.1371/journal.pone.0261143.s004 |
id |
ftsmithonian:oai:figshare.com:article/17208695 |
---|---|
record_format |
openpolar |
spelling |
ftsmithonian:oai:figshare.com:article/17208695 2023-05-15T15:02:57+02:00 Relative synonymous codon usage (RSCU) in each Penstemon plastome. Jason M. Stettler (5488874) Mikel R. Stevens (11841089) Lindsey M. Meservey (11841092) W. Wesley Crump (11841095) Jed D. Grow (11841098) Sydney J. Porter (11841101) L. Stephen Love (11841104) Peter J. Maughan (8887367) Eric N. Jellen (8887364) 2021-12-15T18:37:53Z https://doi.org/10.1371/journal.pone.0261143.s004 unknown https://figshare.com/articles/journal_contribution/Relative_synonymous_codon_usage_RSCU_in_each_i_Penstemon_i_plastome_/17208695 doi:10.1371/journal.pone.0261143.s004 CC BY 4.0 CC-BY Genetics Evolutionary Biology Ecology Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified recent geologic origin provides greater accuracy old world taxa monophyletic clade sister higher nodal support div >< p analyzing phylogenetic relationships plastome based phylogeny complete plastome sequences resolving problematic clades improving phylogenetic resolution concatenated chloroplast sequences six subgenera occupying plastome based phylogenies concatenated sequences phylogenies based major clades improves resolution temperate grasslands scrophulariaceae </ rps2 </ rpoc2 </ rbcl </ rapid rate psba </ psaa </ pleistocene transition plastid genomes plantaginaceae </ perennial forbs penstemon </ ndhf </ matk </ lamiales using lamiales order arid deserts arctic tundra alpine meadows Text Journal contribution 2021 ftsmithonian https://doi.org/10.1371/journal.pone.0261143.s004 2021-12-19T19:25:10Z Codons with moderate to high preference, RSCU values above 1.2, for each amino acid are in bold text. Only leucine, arginine, and serine have more than one codon with high preferences. Most amino acids with two codons had a preference for one codon, the exceptions being cysteine, lysine, and asparagine. (DOCX) Other Non-Article Part of Journal/Newspaper Arctic Tundra Unknown Arctic |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
ftsmithonian |
language |
unknown |
topic |
Genetics Evolutionary Biology Ecology Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified recent geologic origin provides greater accuracy old world taxa monophyletic clade sister higher nodal support div >< p analyzing phylogenetic relationships plastome based phylogeny complete plastome sequences resolving problematic clades improving phylogenetic resolution concatenated chloroplast sequences six subgenera occupying plastome based phylogenies concatenated sequences phylogenies based major clades improves resolution temperate grasslands scrophulariaceae </ rps2 </ rpoc2 </ rbcl </ rapid rate psba </ psaa </ pleistocene transition plastid genomes plantaginaceae </ perennial forbs penstemon </ ndhf </ matk </ lamiales using lamiales order arid deserts arctic tundra alpine meadows |
spellingShingle |
Genetics Evolutionary Biology Ecology Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified recent geologic origin provides greater accuracy old world taxa monophyletic clade sister higher nodal support div >< p analyzing phylogenetic relationships plastome based phylogeny complete plastome sequences resolving problematic clades improving phylogenetic resolution concatenated chloroplast sequences six subgenera occupying plastome based phylogenies concatenated sequences phylogenies based major clades improves resolution temperate grasslands scrophulariaceae </ rps2 </ rpoc2 </ rbcl </ rapid rate psba </ psaa </ pleistocene transition plastid genomes plantaginaceae </ perennial forbs penstemon </ ndhf </ matk </ lamiales using lamiales order arid deserts arctic tundra alpine meadows Jason M. Stettler (5488874) Mikel R. Stevens (11841089) Lindsey M. Meservey (11841092) W. Wesley Crump (11841095) Jed D. Grow (11841098) Sydney J. Porter (11841101) L. Stephen Love (11841104) Peter J. Maughan (8887367) Eric N. Jellen (8887364) Relative synonymous codon usage (RSCU) in each Penstemon plastome. |
topic_facet |
Genetics Evolutionary Biology Ecology Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified recent geologic origin provides greater accuracy old world taxa monophyletic clade sister higher nodal support div >< p analyzing phylogenetic relationships plastome based phylogeny complete plastome sequences resolving problematic clades improving phylogenetic resolution concatenated chloroplast sequences six subgenera occupying plastome based phylogenies concatenated sequences phylogenies based major clades improves resolution temperate grasslands scrophulariaceae </ rps2 </ rpoc2 </ rbcl </ rapid rate psba </ psaa </ pleistocene transition plastid genomes plantaginaceae </ perennial forbs penstemon </ ndhf </ matk </ lamiales using lamiales order arid deserts arctic tundra alpine meadows |
description |
Codons with moderate to high preference, RSCU values above 1.2, for each amino acid are in bold text. Only leucine, arginine, and serine have more than one codon with high preferences. Most amino acids with two codons had a preference for one codon, the exceptions being cysteine, lysine, and asparagine. (DOCX) |
format |
Other Non-Article Part of Journal/Newspaper |
author |
Jason M. Stettler (5488874) Mikel R. Stevens (11841089) Lindsey M. Meservey (11841092) W. Wesley Crump (11841095) Jed D. Grow (11841098) Sydney J. Porter (11841101) L. Stephen Love (11841104) Peter J. Maughan (8887367) Eric N. Jellen (8887364) |
author_facet |
Jason M. Stettler (5488874) Mikel R. Stevens (11841089) Lindsey M. Meservey (11841092) W. Wesley Crump (11841095) Jed D. Grow (11841098) Sydney J. Porter (11841101) L. Stephen Love (11841104) Peter J. Maughan (8887367) Eric N. Jellen (8887364) |
author_sort |
Jason M. Stettler (5488874) |
title |
Relative synonymous codon usage (RSCU) in each Penstemon plastome. |
title_short |
Relative synonymous codon usage (RSCU) in each Penstemon plastome. |
title_full |
Relative synonymous codon usage (RSCU) in each Penstemon plastome. |
title_fullStr |
Relative synonymous codon usage (RSCU) in each Penstemon plastome. |
title_full_unstemmed |
Relative synonymous codon usage (RSCU) in each Penstemon plastome. |
title_sort |
relative synonymous codon usage (rscu) in each penstemon plastome. |
publishDate |
2021 |
url |
https://doi.org/10.1371/journal.pone.0261143.s004 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic Tundra |
genre_facet |
Arctic Tundra |
op_relation |
https://figshare.com/articles/journal_contribution/Relative_synonymous_codon_usage_RSCU_in_each_i_Penstemon_i_plastome_/17208695 doi:10.1371/journal.pone.0261143.s004 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1371/journal.pone.0261143.s004 |
_version_ |
1766334869281964032 |