Simple sequence repeats (SSR) by location in each Penstemon plastome.
The physical locations and lengths of each SSR identified using MISA. Sizes and positions of each SSR varies between taxa due to indel mutations. We observed several incidences where two SSR loci were physically separated or absent in some linages, but directly adjacent in other taxa (bold text). (D...
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Online Access: | https://doi.org/10.1371/journal.pone.0261143.s003 |
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ftsmithonian:oai:figshare.com:article/17208692 2023-05-15T15:02:57+02:00 Simple sequence repeats (SSR) by location in each Penstemon plastome. Jason M. Stettler (5488874) Mikel R. Stevens (11841089) Lindsey M. Meservey (11841092) W. Wesley Crump (11841095) Jed D. Grow (11841098) Sydney J. Porter (11841101) L. Stephen Love (11841104) Peter J. Maughan (8887367) Eric N. Jellen (8887364) 2021-12-15T18:37:53Z https://doi.org/10.1371/journal.pone.0261143.s003 unknown https://figshare.com/articles/journal_contribution/Simple_sequence_repeats_SSR_by_location_in_each_i_Penstemon_i_plastome_/17208692 doi:10.1371/journal.pone.0261143.s003 CC BY 4.0 CC-BY Genetics Evolutionary Biology Ecology Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified recent geologic origin provides greater accuracy old world taxa monophyletic clade sister higher nodal support div >< p analyzing phylogenetic relationships plastome based phylogeny complete plastome sequences resolving problematic clades improving phylogenetic resolution concatenated chloroplast sequences six subgenera occupying plastome based phylogenies concatenated sequences phylogenies based major clades improves resolution temperate grasslands scrophulariaceae </ rps2 </ rpoc2 </ rbcl </ rapid rate psba </ psaa </ pleistocene transition plastid genomes plantaginaceae </ perennial forbs penstemon </ ndhf </ matk </ lamiales using lamiales order arid deserts arctic tundra alpine meadows Text Journal contribution 2021 ftsmithonian https://doi.org/10.1371/journal.pone.0261143.s003 2021-12-19T19:25:11Z The physical locations and lengths of each SSR identified using MISA. Sizes and positions of each SSR varies between taxa due to indel mutations. We observed several incidences where two SSR loci were physically separated or absent in some linages, but directly adjacent in other taxa (bold text). (DOCX) Other Non-Article Part of Journal/Newspaper Arctic Tundra Unknown Arctic Indel’ ENVELOPE(35.282,35.282,66.963,66.963) |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
ftsmithonian |
language |
unknown |
topic |
Genetics Evolutionary Biology Ecology Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified recent geologic origin provides greater accuracy old world taxa monophyletic clade sister higher nodal support div >< p analyzing phylogenetic relationships plastome based phylogeny complete plastome sequences resolving problematic clades improving phylogenetic resolution concatenated chloroplast sequences six subgenera occupying plastome based phylogenies concatenated sequences phylogenies based major clades improves resolution temperate grasslands scrophulariaceae </ rps2 </ rpoc2 </ rbcl </ rapid rate psba </ psaa </ pleistocene transition plastid genomes plantaginaceae </ perennial forbs penstemon </ ndhf </ matk </ lamiales using lamiales order arid deserts arctic tundra alpine meadows |
spellingShingle |
Genetics Evolutionary Biology Ecology Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified recent geologic origin provides greater accuracy old world taxa monophyletic clade sister higher nodal support div >< p analyzing phylogenetic relationships plastome based phylogeny complete plastome sequences resolving problematic clades improving phylogenetic resolution concatenated chloroplast sequences six subgenera occupying plastome based phylogenies concatenated sequences phylogenies based major clades improves resolution temperate grasslands scrophulariaceae </ rps2 </ rpoc2 </ rbcl </ rapid rate psba </ psaa </ pleistocene transition plastid genomes plantaginaceae </ perennial forbs penstemon </ ndhf </ matk </ lamiales using lamiales order arid deserts arctic tundra alpine meadows Jason M. Stettler (5488874) Mikel R. Stevens (11841089) Lindsey M. Meservey (11841092) W. Wesley Crump (11841095) Jed D. Grow (11841098) Sydney J. Porter (11841101) L. Stephen Love (11841104) Peter J. Maughan (8887367) Eric N. Jellen (8887364) Simple sequence repeats (SSR) by location in each Penstemon plastome. |
topic_facet |
Genetics Evolutionary Biology Ecology Plant Biology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified recent geologic origin provides greater accuracy old world taxa monophyletic clade sister higher nodal support div >< p analyzing phylogenetic relationships plastome based phylogeny complete plastome sequences resolving problematic clades improving phylogenetic resolution concatenated chloroplast sequences six subgenera occupying plastome based phylogenies concatenated sequences phylogenies based major clades improves resolution temperate grasslands scrophulariaceae </ rps2 </ rpoc2 </ rbcl </ rapid rate psba </ psaa </ pleistocene transition plastid genomes plantaginaceae </ perennial forbs penstemon </ ndhf </ matk </ lamiales using lamiales order arid deserts arctic tundra alpine meadows |
description |
The physical locations and lengths of each SSR identified using MISA. Sizes and positions of each SSR varies between taxa due to indel mutations. We observed several incidences where two SSR loci were physically separated or absent in some linages, but directly adjacent in other taxa (bold text). (DOCX) |
format |
Other Non-Article Part of Journal/Newspaper |
author |
Jason M. Stettler (5488874) Mikel R. Stevens (11841089) Lindsey M. Meservey (11841092) W. Wesley Crump (11841095) Jed D. Grow (11841098) Sydney J. Porter (11841101) L. Stephen Love (11841104) Peter J. Maughan (8887367) Eric N. Jellen (8887364) |
author_facet |
Jason M. Stettler (5488874) Mikel R. Stevens (11841089) Lindsey M. Meservey (11841092) W. Wesley Crump (11841095) Jed D. Grow (11841098) Sydney J. Porter (11841101) L. Stephen Love (11841104) Peter J. Maughan (8887367) Eric N. Jellen (8887364) |
author_sort |
Jason M. Stettler (5488874) |
title |
Simple sequence repeats (SSR) by location in each Penstemon plastome. |
title_short |
Simple sequence repeats (SSR) by location in each Penstemon plastome. |
title_full |
Simple sequence repeats (SSR) by location in each Penstemon plastome. |
title_fullStr |
Simple sequence repeats (SSR) by location in each Penstemon plastome. |
title_full_unstemmed |
Simple sequence repeats (SSR) by location in each Penstemon plastome. |
title_sort |
simple sequence repeats (ssr) by location in each penstemon plastome. |
publishDate |
2021 |
url |
https://doi.org/10.1371/journal.pone.0261143.s003 |
long_lat |
ENVELOPE(35.282,35.282,66.963,66.963) |
geographic |
Arctic Indel’ |
geographic_facet |
Arctic Indel’ |
genre |
Arctic Tundra |
genre_facet |
Arctic Tundra |
op_relation |
https://figshare.com/articles/journal_contribution/Simple_sequence_repeats_SSR_by_location_in_each_i_Penstemon_i_plastome_/17208692 doi:10.1371/journal.pone.0261143.s003 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1371/journal.pone.0261143.s003 |
_version_ |
1766334869461270528 |