Additional file 14 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities

• Main Authors: Raminta Kazlauskaite (11368785), Bachar Cheaib (718391), Chloe Heys (3267108), Umer Zeeshan Ijaz (3769318), Stephanie Connelly (8926943), William Sloan (523554), Julie Russel (11368788), Laura Rubio (2662996), John Sweetman (739905), Alex Kitts (11368791), Philip McGinnity (3250896), Philip Lyons (11368794), Martin Llewellyn (6532214)
• Format: Other Non-Article Part of Journal/Newspaper
• Language: unknown
• Published: 2021
• Subjects: Microbiology; Genetics; SalmoSim; Gut microbiota; In vitro gut model system; Atlantic salmon; NGS
• Online Access: https://doi.org/10.6084/m9.figshare.16551213.v1

Additional file 13: Figure S7. Calculated alpha-diversity metrics within different gut compartments of real salmon and SalmoSim fed on Fish meal and Fish meal free diets. Figure visually represents different alpha diversity outputs within different gut compartments of real salmon in red and SalmoSim in yellow (stable time points: 16, 18 and 20 fed on Fish meal, and 36, 38 and 40 fed on Fish meal free diet) fed on Fish meal and Fish meal free diets. A visually represents effective richness (number of OTUs), B represents effective Shannon diversity. The lines above bar plots represent statistically significant differences after feed change. The stars flag the levels of significance: one star (*) for p-values between 0.05 and 0.01, two stars (**) for p-values between 0.01 and 0.001, and three stars (***) for p-values below 0.001.