Genotypic structure of mussel samples from contact zones between M . edulis and M . trossulus .

A. Frequency distributions of individual q-values in pooled samples. Red and blue bars indicate T- and E-morphotypes, correspondingly. B. Distributions of individual q-values in samples ordinated by Ptros (proportion of M . trossulus ). Red and blue dots indicate T- and E-morphotypes, correspondingl...

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Main Authors: Vadim Khaitov (2589874), Julia Marchenko (11177903), Marina Katolikova (2589880), Risto Väinölä (2589886), Sarah E. Kingston (3608393), David B. Carlon (11177906), Michael Gantsevich (2589877), Petr Strelkov (2589883)
Format: Still Image
Language:unknown
Published: 2021
Subjects:
Gam
Online Access:https://doi.org/10.1371/journal.pone.0249587.s002
id ftsmithonian:oai:figshare.com:article/15045758
record_format openpolar
spelling ftsmithonian:oai:figshare.com:article/15045758 2023-05-15T15:08:15+02:00 Genotypic structure of mussel samples from contact zones between M . edulis and M . trossulus . Vadim Khaitov (2589874) Julia Marchenko (11177903) Marina Katolikova (2589880) Risto Väinölä (2589886) Sarah E. Kingston (3608393) David B. Carlon (11177906) Michael Gantsevich (2589877) Petr Strelkov (2589883) 2021-07-23T17:34:32Z https://doi.org/10.1371/journal.pone.0249587.s002 unknown https://figshare.com/articles/figure/Genotypic_structure_of_mussel_samples_from_contact_zones_between_i_M_i_i_edulis_i_and_i_M_i_i_trossulus_i_/15045758 doi:10.1371/journal.pone.0249587.s002 CC BY 4.0 CC-BY Evolutionary Biology Ecology Inorganic Chemistry Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified morphotype trossulu White Sea semi-diagnostic conchological character Arctic Barents Sea species identification mussels Mytilus edulis L Baltic Sea unstudied contact zones Image Figure 2021 ftsmithonian https://doi.org/10.1371/journal.pone.0249587.s002 2021-07-25T16:24:04Z A. Frequency distributions of individual q-values in pooled samples. Red and blue bars indicate T- and E-morphotypes, correspondingly. B. Distributions of individual q-values in samples ordinated by Ptros (proportion of M . trossulus ). Red and blue dots indicate T- and E-morphotypes, correspondingly. To avoid overplotting, the horizontal position of all points (individual mussels) was jittered by adding a small random value. For visual purposes, chart areas with maximal dots density are contoured and the probability of T-morphotype presence is shown by the color gradient. The contour lines represent the kernel density estimations (Venables, Ripley 2002) with density2d() function in “ggplot2” package. The probability was assessed using the binomial general additive model, GAM (Zuur, 2012) with the binary outcome (T vs E morphotype) as dependent variable and “Structure q-score”, “ Ptros ” and “ Set ” as independent predictors. SCOT and NORW were not included in GAM due to poore cover of Ptros axis. References for S2 Fig : Venables, W. N. and Ripley, B. D. (2002) Modern Applied Statistics with S. Fourth edition. Springer. Zuur, A.F. (2012) A Beginner’s Guide to Generalized Additive Models with R. Highland Statistics Ltd, Newburgh. (TIF) Still Image Arctic Barents Sea White Sea Unknown Arctic Barents Sea White Sea Gam ENVELOPE(-57.955,-57.955,-61.923,-61.923)
institution Open Polar
collection Unknown
op_collection_id ftsmithonian
language unknown
topic Evolutionary Biology
Ecology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
morphotype
trossulu
White Sea
semi-diagnostic conchological character
Arctic Barents Sea
species identification
mussels Mytilus edulis L
Baltic Sea
unstudied contact zones
spellingShingle Evolutionary Biology
Ecology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
morphotype
trossulu
White Sea
semi-diagnostic conchological character
Arctic Barents Sea
species identification
mussels Mytilus edulis L
Baltic Sea
unstudied contact zones
Vadim Khaitov (2589874)
Julia Marchenko (11177903)
Marina Katolikova (2589880)
Risto Väinölä (2589886)
Sarah E. Kingston (3608393)
David B. Carlon (11177906)
Michael Gantsevich (2589877)
Petr Strelkov (2589883)
Genotypic structure of mussel samples from contact zones between M . edulis and M . trossulus .
topic_facet Evolutionary Biology
Ecology
Inorganic Chemistry
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
morphotype
trossulu
White Sea
semi-diagnostic conchological character
Arctic Barents Sea
species identification
mussels Mytilus edulis L
Baltic Sea
unstudied contact zones
description A. Frequency distributions of individual q-values in pooled samples. Red and blue bars indicate T- and E-morphotypes, correspondingly. B. Distributions of individual q-values in samples ordinated by Ptros (proportion of M . trossulus ). Red and blue dots indicate T- and E-morphotypes, correspondingly. To avoid overplotting, the horizontal position of all points (individual mussels) was jittered by adding a small random value. For visual purposes, chart areas with maximal dots density are contoured and the probability of T-morphotype presence is shown by the color gradient. The contour lines represent the kernel density estimations (Venables, Ripley 2002) with density2d() function in “ggplot2” package. The probability was assessed using the binomial general additive model, GAM (Zuur, 2012) with the binary outcome (T vs E morphotype) as dependent variable and “Structure q-score”, “ Ptros ” and “ Set ” as independent predictors. SCOT and NORW were not included in GAM due to poore cover of Ptros axis. References for S2 Fig : Venables, W. N. and Ripley, B. D. (2002) Modern Applied Statistics with S. Fourth edition. Springer. Zuur, A.F. (2012) A Beginner’s Guide to Generalized Additive Models with R. Highland Statistics Ltd, Newburgh. (TIF)
format Still Image
author Vadim Khaitov (2589874)
Julia Marchenko (11177903)
Marina Katolikova (2589880)
Risto Väinölä (2589886)
Sarah E. Kingston (3608393)
David B. Carlon (11177906)
Michael Gantsevich (2589877)
Petr Strelkov (2589883)
author_facet Vadim Khaitov (2589874)
Julia Marchenko (11177903)
Marina Katolikova (2589880)
Risto Väinölä (2589886)
Sarah E. Kingston (3608393)
David B. Carlon (11177906)
Michael Gantsevich (2589877)
Petr Strelkov (2589883)
author_sort Vadim Khaitov (2589874)
title Genotypic structure of mussel samples from contact zones between M . edulis and M . trossulus .
title_short Genotypic structure of mussel samples from contact zones between M . edulis and M . trossulus .
title_full Genotypic structure of mussel samples from contact zones between M . edulis and M . trossulus .
title_fullStr Genotypic structure of mussel samples from contact zones between M . edulis and M . trossulus .
title_full_unstemmed Genotypic structure of mussel samples from contact zones between M . edulis and M . trossulus .
title_sort genotypic structure of mussel samples from contact zones between m . edulis and m . trossulus .
publishDate 2021
url https://doi.org/10.1371/journal.pone.0249587.s002
long_lat ENVELOPE(-57.955,-57.955,-61.923,-61.923)
geographic Arctic
Barents Sea
White Sea
Gam
geographic_facet Arctic
Barents Sea
White Sea
Gam
genre Arctic
Barents Sea
White Sea
genre_facet Arctic
Barents Sea
White Sea
op_relation https://figshare.com/articles/figure/Genotypic_structure_of_mussel_samples_from_contact_zones_between_i_M_i_i_edulis_i_and_i_M_i_i_trossulus_i_/15045758
doi:10.1371/journal.pone.0249587.s002
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pone.0249587.s002
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