Additional file 3 of Single nucleotide replacement in the Atlantic salmon genome using CRISPR/Cas9 and asymmetrical oligonucleotide donors
Additional file 3: Figure S2. Comparison of symmetrical and asymmetrical ODNs for slc45a2 FLAG knock-in. All the ODNs compared here were designed for slc45a2 to KI a FLAG element. The ODN concentration was 1.5 μM. The symmetrical ODNs are a pool of S 24, AS 24, ds 24, S 48 and S 84 (described in Str...
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ftsmithonian:oai:figshare.com:article/15041175 2023-05-15T15:32:13+02:00 Additional file 3 of Single nucleotide replacement in the Atlantic salmon genome using CRISPR/Cas9 and asymmetrical oligonucleotide donors Anne Hege Straume (8720607) Erik Kjærner-Semb (823939) Kai Ove Skaftnesmo (11174451) Hilal Güralp (11174454) Simon Lillico (6164513) Anna Wargelius (634280) Rolf Brudvik Edvardsen (9517013) 2021-07-22T05:00:00Z https://doi.org/10.6084/m9.figshare.15041175.v1 unknown https://figshare.com/articles/presentation/Additional_file_3_of_Single_nucleotide_replacement_in_the_Atlantic_salmon_genome_using_CRISPR_Cas9_and_asymmetrical_oligonucleotide_donors/15041175 doi:10.6084/m9.figshare.15041175.v1 CC BY + CC0 CC0 CC-BY Genetics HDR ODN Gene editing Knock-in Aquaculture New breeding technologies Text Presentation 2021 ftsmithonian https://doi.org/10.6084/m9.figshare.15041175.v1 2021-07-25T16:27:59Z Additional file 3: Figure S2. Comparison of symmetrical and asymmetrical ODNs for slc45a2 FLAG knock-in. All the ODNs compared here were designed for slc45a2 to KI a FLAG element. The ODN concentration was 1.5 μM. The symmetrical ODNs are a pool of S 24, AS 24, ds 24, S 48 and S 84 (described in Straume et.al 2020). The asymmetrical ODN design is illustrated in Suplemmentary Fig. 1 A. Green dots represent perfect HDR, black squares represent erroneous HDR. Mutant fish were analysed using Illumina MiSeq. Read counts for each sample are given in % of the total number of reads with at least 100 identical reads. The error bars indicate the SEM of the mean for each group. A Mann-Whitney test was used to compare the mean rank of symmetrical vs. asymmetrical ODNs, analyzing the groups perfect and erroneous HDR separately. Different lower-case letters indicate significant differences (P < 0.05). Conference Object Atlantic salmon Unknown Straume ENVELOPE(14.472,14.472,68.689,68.689) |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
ftsmithonian |
language |
unknown |
topic |
Genetics HDR ODN Gene editing Knock-in Aquaculture New breeding technologies |
spellingShingle |
Genetics HDR ODN Gene editing Knock-in Aquaculture New breeding technologies Anne Hege Straume (8720607) Erik Kjærner-Semb (823939) Kai Ove Skaftnesmo (11174451) Hilal Güralp (11174454) Simon Lillico (6164513) Anna Wargelius (634280) Rolf Brudvik Edvardsen (9517013) Additional file 3 of Single nucleotide replacement in the Atlantic salmon genome using CRISPR/Cas9 and asymmetrical oligonucleotide donors |
topic_facet |
Genetics HDR ODN Gene editing Knock-in Aquaculture New breeding technologies |
description |
Additional file 3: Figure S2. Comparison of symmetrical and asymmetrical ODNs for slc45a2 FLAG knock-in. All the ODNs compared here were designed for slc45a2 to KI a FLAG element. The ODN concentration was 1.5 μM. The symmetrical ODNs are a pool of S 24, AS 24, ds 24, S 48 and S 84 (described in Straume et.al 2020). The asymmetrical ODN design is illustrated in Suplemmentary Fig. 1 A. Green dots represent perfect HDR, black squares represent erroneous HDR. Mutant fish were analysed using Illumina MiSeq. Read counts for each sample are given in % of the total number of reads with at least 100 identical reads. The error bars indicate the SEM of the mean for each group. A Mann-Whitney test was used to compare the mean rank of symmetrical vs. asymmetrical ODNs, analyzing the groups perfect and erroneous HDR separately. Different lower-case letters indicate significant differences (P < 0.05). |
format |
Conference Object |
author |
Anne Hege Straume (8720607) Erik Kjærner-Semb (823939) Kai Ove Skaftnesmo (11174451) Hilal Güralp (11174454) Simon Lillico (6164513) Anna Wargelius (634280) Rolf Brudvik Edvardsen (9517013) |
author_facet |
Anne Hege Straume (8720607) Erik Kjærner-Semb (823939) Kai Ove Skaftnesmo (11174451) Hilal Güralp (11174454) Simon Lillico (6164513) Anna Wargelius (634280) Rolf Brudvik Edvardsen (9517013) |
author_sort |
Anne Hege Straume (8720607) |
title |
Additional file 3 of Single nucleotide replacement in the Atlantic salmon genome using CRISPR/Cas9 and asymmetrical oligonucleotide donors |
title_short |
Additional file 3 of Single nucleotide replacement in the Atlantic salmon genome using CRISPR/Cas9 and asymmetrical oligonucleotide donors |
title_full |
Additional file 3 of Single nucleotide replacement in the Atlantic salmon genome using CRISPR/Cas9 and asymmetrical oligonucleotide donors |
title_fullStr |
Additional file 3 of Single nucleotide replacement in the Atlantic salmon genome using CRISPR/Cas9 and asymmetrical oligonucleotide donors |
title_full_unstemmed |
Additional file 3 of Single nucleotide replacement in the Atlantic salmon genome using CRISPR/Cas9 and asymmetrical oligonucleotide donors |
title_sort |
additional file 3 of single nucleotide replacement in the atlantic salmon genome using crispr/cas9 and asymmetrical oligonucleotide donors |
publishDate |
2021 |
url |
https://doi.org/10.6084/m9.figshare.15041175.v1 |
long_lat |
ENVELOPE(14.472,14.472,68.689,68.689) |
geographic |
Straume |
geographic_facet |
Straume |
genre |
Atlantic salmon |
genre_facet |
Atlantic salmon |
op_relation |
https://figshare.com/articles/presentation/Additional_file_3_of_Single_nucleotide_replacement_in_the_Atlantic_salmon_genome_using_CRISPR_Cas9_and_asymmetrical_oligonucleotide_donors/15041175 doi:10.6084/m9.figshare.15041175.v1 |
op_rights |
CC BY + CC0 |
op_rightsnorm |
CC0 CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.15041175.v1 |
_version_ |
1766362731015831552 |