Additional file 2 of Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems
Additional file 1: Table S1. Statistics of de novo assemblies and ARG-carrying contigs. Fig. S1. Geographical distribution of sampling sites. Fig. S2. Antibiotic resistance regulatory genes in soils with arlR, cpxR, ompR, vanR and vanS found in all 26 soils and part of shared background. Fig. S3. Ve...
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ftsmithonian:oai:figshare.com:article/14600412 2023-05-15T18:40:12+02:00 Additional file 2 of Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems Xun Qian (10804386) Santosh Gunturu (10804389) Jiarong Guo (5497091) Benli Chai (2822282) James R. Cole (7496771) Jie Gu (607491) James M. Tiedje (14711) 2021-05-14T05:00:00Z https://doi.org/10.6084/m9.figshare.14600412.v1 unknown https://figshare.com/articles/journal_contribution/Additional_file_2_of_Metagenomic_analysis_reveals_the_shared_and_distinct_features_of_the_soil_resistome_across_tundra_temperate_prairie_and_tropical_ecosystems/14600412 doi:10.6084/m9.figshare.14600412.v1 CC BY + CC0 CC0 CC-BY Microbiology Ecology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified Soil resistome Geographical distribution Background ARG Clinical ARG Anthropogenic impact Text Journal contribution 2021 ftsmithonian https://doi.org/10.6084/m9.figshare.14600412.v1 2021-05-21T14:46:09Z Additional file 1: Table S1. Statistics of de novo assemblies and ARG-carrying contigs. Fig. S1. Geographical distribution of sampling sites. Fig. S2. Antibiotic resistance regulatory genes in soils with arlR, cpxR, ompR, vanR and vanS found in all 26 soils and part of shared background. Fig. S3. Venn diagram showing shared ARGs among Alaska, Midwest USA, and Amazon soils. Fig. S4. (A) The shared and exclusive ARGs between Amazon rainforest soils and pasture soils. (B) The composition of the exclusive ARGs. Fig. S5. ARG coverage (length of an assembled contig divided by length of the intact ARG) on de novo assemblies. Fig. S6. Network analysis assessing the ARG cluster across soils from tundra, temperate prairie and tropical ecosystems. Fig. S7. Pearson correlation between (A) ARG diversity and bacterial diversity; (B) resistome abundance and bacterial diversity. Fig. S8. Rank percentage of soil resistome abundance of top 50 ARGs. Fig. S9. Nonpareil curves showing estimated average coverage in soil datasets. Fig. S10. Per base coverage of vanS regulatory gene in 26 soils. Other Non-Article Part of Journal/Newspaper Tundra Alaska Unknown Venn ENVELOPE(9.281,9.281,63.350,63.350) |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
ftsmithonian |
language |
unknown |
topic |
Microbiology Ecology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified Soil resistome Geographical distribution Background ARG Clinical ARG Anthropogenic impact |
spellingShingle |
Microbiology Ecology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified Soil resistome Geographical distribution Background ARG Clinical ARG Anthropogenic impact Xun Qian (10804386) Santosh Gunturu (10804389) Jiarong Guo (5497091) Benli Chai (2822282) James R. Cole (7496771) Jie Gu (607491) James M. Tiedje (14711) Additional file 2 of Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems |
topic_facet |
Microbiology Ecology Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified Soil resistome Geographical distribution Background ARG Clinical ARG Anthropogenic impact |
description |
Additional file 1: Table S1. Statistics of de novo assemblies and ARG-carrying contigs. Fig. S1. Geographical distribution of sampling sites. Fig. S2. Antibiotic resistance regulatory genes in soils with arlR, cpxR, ompR, vanR and vanS found in all 26 soils and part of shared background. Fig. S3. Venn diagram showing shared ARGs among Alaska, Midwest USA, and Amazon soils. Fig. S4. (A) The shared and exclusive ARGs between Amazon rainforest soils and pasture soils. (B) The composition of the exclusive ARGs. Fig. S5. ARG coverage (length of an assembled contig divided by length of the intact ARG) on de novo assemblies. Fig. S6. Network analysis assessing the ARG cluster across soils from tundra, temperate prairie and tropical ecosystems. Fig. S7. Pearson correlation between (A) ARG diversity and bacterial diversity; (B) resistome abundance and bacterial diversity. Fig. S8. Rank percentage of soil resistome abundance of top 50 ARGs. Fig. S9. Nonpareil curves showing estimated average coverage in soil datasets. Fig. S10. Per base coverage of vanS regulatory gene in 26 soils. |
format |
Other Non-Article Part of Journal/Newspaper |
author |
Xun Qian (10804386) Santosh Gunturu (10804389) Jiarong Guo (5497091) Benli Chai (2822282) James R. Cole (7496771) Jie Gu (607491) James M. Tiedje (14711) |
author_facet |
Xun Qian (10804386) Santosh Gunturu (10804389) Jiarong Guo (5497091) Benli Chai (2822282) James R. Cole (7496771) Jie Gu (607491) James M. Tiedje (14711) |
author_sort |
Xun Qian (10804386) |
title |
Additional file 2 of Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems |
title_short |
Additional file 2 of Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems |
title_full |
Additional file 2 of Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems |
title_fullStr |
Additional file 2 of Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems |
title_full_unstemmed |
Additional file 2 of Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems |
title_sort |
additional file 2 of metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems |
publishDate |
2021 |
url |
https://doi.org/10.6084/m9.figshare.14600412.v1 |
long_lat |
ENVELOPE(9.281,9.281,63.350,63.350) |
geographic |
Venn |
geographic_facet |
Venn |
genre |
Tundra Alaska |
genre_facet |
Tundra Alaska |
op_relation |
https://figshare.com/articles/journal_contribution/Additional_file_2_of_Metagenomic_analysis_reveals_the_shared_and_distinct_features_of_the_soil_resistome_across_tundra_temperate_prairie_and_tropical_ecosystems/14600412 doi:10.6084/m9.figshare.14600412.v1 |
op_rights |
CC BY + CC0 |
op_rightsnorm |
CC0 CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.14600412.v1 |
_version_ |
1766229476174200832 |