Visualizing DNA folding and RNA in embryos at single-cell resolution
See: https://www.nature.com/articles/s41586-019-1035-4 for a description of the approach Dataset organization: The dnaData files contain 3D chromatin paths measured using Optical Reconstruction of Chromatin Architecture are recorded in nanometers, (x,y,z positions). Individual paths are also indexed...
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ftsmithonian:oai:figshare.com:article/14553642 2023-05-15T17:53:44+02:00 Visualizing DNA folding and RNA in embryos at single-cell resolution Leslie J. Mateo (10763019) Sedona E. Murphy (10763022) Antonina Hafner (8466663) Isaac S. Cinquini (10763025) Carly A. Walker (10763028) Alistair N. Boettiger (10763031) 2019-03-18T00:00:00Z https://doi.org/10.5281/zenodo.4741214 unknown https://figshare.com/articles/dataset/Visualizing_DNA_folding_and_RNA_in_embryos_at_single-cell_resolution/14553642 doi:10.5281/zenodo.4741214 CC BY 4.0 CC-BY Biophysics Biochemistry Cell Biology Genetics Molecular Biology Developmental Biology Cancer Hematology Infectious Diseases Virology Chemical Sciences not elsewhere classified ORCA super-resolution 3D genome spatial omics Dataset 2019 ftsmithonian https://doi.org/10.5281/zenodo.4741214 2021-05-21T15:26:33Z See: https://www.nature.com/articles/s41586-019-1035-4 for a description of the approach Dataset organization: The dnaData files contain 3D chromatin paths measured using Optical Reconstruction of Chromatin Architecture are recorded in nanometers, (x,y,z positions). Individual paths are also indexed by cell ID number, embryo ID number, embryo segment type ID number, brightness, and genomic position. The expression level of 29 RNA targets in the corresponding cells are indexed in the accompanying rnaData document. The cell ID number can be used to link the RNA expression and DNA structure from the same cells. RNA expression is provided in molecule counts per cell for cytoplasmic mRNA targets, and in arbitrary brightness units for intronic RNA targets. Dataset Orca Unknown |
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Open Polar |
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ftsmithonian |
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topic |
Biophysics Biochemistry Cell Biology Genetics Molecular Biology Developmental Biology Cancer Hematology Infectious Diseases Virology Chemical Sciences not elsewhere classified ORCA super-resolution 3D genome spatial omics |
spellingShingle |
Biophysics Biochemistry Cell Biology Genetics Molecular Biology Developmental Biology Cancer Hematology Infectious Diseases Virology Chemical Sciences not elsewhere classified ORCA super-resolution 3D genome spatial omics Leslie J. Mateo (10763019) Sedona E. Murphy (10763022) Antonina Hafner (8466663) Isaac S. Cinquini (10763025) Carly A. Walker (10763028) Alistair N. Boettiger (10763031) Visualizing DNA folding and RNA in embryos at single-cell resolution |
topic_facet |
Biophysics Biochemistry Cell Biology Genetics Molecular Biology Developmental Biology Cancer Hematology Infectious Diseases Virology Chemical Sciences not elsewhere classified ORCA super-resolution 3D genome spatial omics |
description |
See: https://www.nature.com/articles/s41586-019-1035-4 for a description of the approach Dataset organization: The dnaData files contain 3D chromatin paths measured using Optical Reconstruction of Chromatin Architecture are recorded in nanometers, (x,y,z positions). Individual paths are also indexed by cell ID number, embryo ID number, embryo segment type ID number, brightness, and genomic position. The expression level of 29 RNA targets in the corresponding cells are indexed in the accompanying rnaData document. The cell ID number can be used to link the RNA expression and DNA structure from the same cells. RNA expression is provided in molecule counts per cell for cytoplasmic mRNA targets, and in arbitrary brightness units for intronic RNA targets. |
format |
Dataset |
author |
Leslie J. Mateo (10763019) Sedona E. Murphy (10763022) Antonina Hafner (8466663) Isaac S. Cinquini (10763025) Carly A. Walker (10763028) Alistair N. Boettiger (10763031) |
author_facet |
Leslie J. Mateo (10763019) Sedona E. Murphy (10763022) Antonina Hafner (8466663) Isaac S. Cinquini (10763025) Carly A. Walker (10763028) Alistair N. Boettiger (10763031) |
author_sort |
Leslie J. Mateo (10763019) |
title |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_short |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_full |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_fullStr |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_full_unstemmed |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_sort |
visualizing dna folding and rna in embryos at single-cell resolution |
publishDate |
2019 |
url |
https://doi.org/10.5281/zenodo.4741214 |
genre |
Orca |
genre_facet |
Orca |
op_relation |
https://figshare.com/articles/dataset/Visualizing_DNA_folding_and_RNA_in_embryos_at_single-cell_resolution/14553642 doi:10.5281/zenodo.4741214 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.5281/zenodo.4741214 |
_version_ |
1766161451304615936 |