DNA methylation dynamics in B . hygrometrica plants during acclimation and responding to rapid dehydration stress.
(A) Expression profile of genes encoding DNA methylation and demethylation-related enzymes during drought acclimation, growth, and response to dehydration stress. MET1/CMT3, DNA methyltransferase 1/chromomethylase 3; HDAC, histone deacetylase; DNMT, DNA methyltransferase; DRM2, domains rearranged me...
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ftsmithonian:oai:figshare.com:article/14522305 2023-05-15T16:02:06+02:00 DNA methylation dynamics in B . hygrometrica plants during acclimation and responding to rapid dehydration stress. Run-Ze Sun (6080933) Jie Liu (15128) Yuan-Yuan Wang (349223) Xin Deng (186800) 2021-04-30T17:45:49Z https://doi.org/10.1371/journal.pgen.1009549.g003 unknown https://figshare.com/articles/figure/DNA_methylation_dynamics_in_i_B_i_i_hygrometrica_i_plants_during_acclimation_and_responding_to_rapid_dehydration_stress_/14522305 doi:10.1371/journal.pgen.1009549.g003 CC BY 4.0 CC-BY Microbiology Genetics Molecular Biology Ecology Plant Biology Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified CHG CHH dehydration stress-responsive hypom. gene body methylation levels drought acclimation DNA methylation-mediated modulation context Global transcriptome analysis whole-genome DNA methylation resurrection plant Boea hygrometric. gene expression levels drought acclimation-induced RDT dehydration tolerance CG resurrection plant Boea hygrometrica methylation pathway genes pre-mRNA-splicing factor 38 Mild drought acclimation dehydration stress-induced upregulation dehydration stress response promoter methylation variations acid transporter 1- post-translational protein modification desiccation tolerance acquisition dehydration stress memory Image Figure 2021 ftsmithonian https://doi.org/10.1371/journal.pgen.1009549.g003 2021-05-05T16:58:42Z (A) Expression profile of genes encoding DNA methylation and demethylation-related enzymes during drought acclimation, growth, and response to dehydration stress. MET1/CMT3, DNA methyltransferase 1/chromomethylase 3; HDAC, histone deacetylase; DNMT, DNA methyltransferase; DRM2, domains rearranged methyltransferase 2; DDM1, decrease in DNA methylation 1; RDM4, RNA-directed DNA methylation 4; FDM1, factor of DNA methylation 1; DML/ROS1, DEMETER-like DNA demethylase/repressor of silencing 1. Scale bar represents the normalized expression of each gene between samples. Genes with significant expression changes (fold change ≥ 2 and adjusted p ≤ 0.05) in drought-acclimated plants compared with the non-acclimated control groups (A/F, A4/F4, and A18/F18) and in plants subjected to dehydration stress (SD/F, FD/F, A/F, F4D/F4, A4D/A4, F18D/F18, and A18D/A18) are indicated by asterisks (*) in the corresponding squares. (B) Global changes in the average proportion of methylated C, CG, CHH, and CHG. (C) Correlation analysis between the level of DNA methylation and the expression of methylation pathway genes. (D) Number statistic of DMRs between samples. Hypo- and hyper-DMRs are shown in the left and right columns, respectively. Still Image DML Unknown |
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ftsmithonian |
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topic |
Microbiology Genetics Molecular Biology Ecology Plant Biology Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified CHG CHH dehydration stress-responsive hypom. gene body methylation levels drought acclimation DNA methylation-mediated modulation context Global transcriptome analysis whole-genome DNA methylation resurrection plant Boea hygrometric. gene expression levels drought acclimation-induced RDT dehydration tolerance CG resurrection plant Boea hygrometrica methylation pathway genes pre-mRNA-splicing factor 38 Mild drought acclimation dehydration stress-induced upregulation dehydration stress response promoter methylation variations acid transporter 1- post-translational protein modification desiccation tolerance acquisition dehydration stress memory |
spellingShingle |
Microbiology Genetics Molecular Biology Ecology Plant Biology Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified CHG CHH dehydration stress-responsive hypom. gene body methylation levels drought acclimation DNA methylation-mediated modulation context Global transcriptome analysis whole-genome DNA methylation resurrection plant Boea hygrometric. gene expression levels drought acclimation-induced RDT dehydration tolerance CG resurrection plant Boea hygrometrica methylation pathway genes pre-mRNA-splicing factor 38 Mild drought acclimation dehydration stress-induced upregulation dehydration stress response promoter methylation variations acid transporter 1- post-translational protein modification desiccation tolerance acquisition dehydration stress memory Run-Ze Sun (6080933) Jie Liu (15128) Yuan-Yuan Wang (349223) Xin Deng (186800) DNA methylation dynamics in B . hygrometrica plants during acclimation and responding to rapid dehydration stress. |
topic_facet |
Microbiology Genetics Molecular Biology Ecology Plant Biology Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified CHG CHH dehydration stress-responsive hypom. gene body methylation levels drought acclimation DNA methylation-mediated modulation context Global transcriptome analysis whole-genome DNA methylation resurrection plant Boea hygrometric. gene expression levels drought acclimation-induced RDT dehydration tolerance CG resurrection plant Boea hygrometrica methylation pathway genes pre-mRNA-splicing factor 38 Mild drought acclimation dehydration stress-induced upregulation dehydration stress response promoter methylation variations acid transporter 1- post-translational protein modification desiccation tolerance acquisition dehydration stress memory |
description |
(A) Expression profile of genes encoding DNA methylation and demethylation-related enzymes during drought acclimation, growth, and response to dehydration stress. MET1/CMT3, DNA methyltransferase 1/chromomethylase 3; HDAC, histone deacetylase; DNMT, DNA methyltransferase; DRM2, domains rearranged methyltransferase 2; DDM1, decrease in DNA methylation 1; RDM4, RNA-directed DNA methylation 4; FDM1, factor of DNA methylation 1; DML/ROS1, DEMETER-like DNA demethylase/repressor of silencing 1. Scale bar represents the normalized expression of each gene between samples. Genes with significant expression changes (fold change ≥ 2 and adjusted p ≤ 0.05) in drought-acclimated plants compared with the non-acclimated control groups (A/F, A4/F4, and A18/F18) and in plants subjected to dehydration stress (SD/F, FD/F, A/F, F4D/F4, A4D/A4, F18D/F18, and A18D/A18) are indicated by asterisks (*) in the corresponding squares. (B) Global changes in the average proportion of methylated C, CG, CHH, and CHG. (C) Correlation analysis between the level of DNA methylation and the expression of methylation pathway genes. (D) Number statistic of DMRs between samples. Hypo- and hyper-DMRs are shown in the left and right columns, respectively. |
format |
Still Image |
author |
Run-Ze Sun (6080933) Jie Liu (15128) Yuan-Yuan Wang (349223) Xin Deng (186800) |
author_facet |
Run-Ze Sun (6080933) Jie Liu (15128) Yuan-Yuan Wang (349223) Xin Deng (186800) |
author_sort |
Run-Ze Sun (6080933) |
title |
DNA methylation dynamics in B . hygrometrica plants during acclimation and responding to rapid dehydration stress. |
title_short |
DNA methylation dynamics in B . hygrometrica plants during acclimation and responding to rapid dehydration stress. |
title_full |
DNA methylation dynamics in B . hygrometrica plants during acclimation and responding to rapid dehydration stress. |
title_fullStr |
DNA methylation dynamics in B . hygrometrica plants during acclimation and responding to rapid dehydration stress. |
title_full_unstemmed |
DNA methylation dynamics in B . hygrometrica plants during acclimation and responding to rapid dehydration stress. |
title_sort |
dna methylation dynamics in b . hygrometrica plants during acclimation and responding to rapid dehydration stress. |
publishDate |
2021 |
url |
https://doi.org/10.1371/journal.pgen.1009549.g003 |
genre |
DML |
genre_facet |
DML |
op_relation |
https://figshare.com/articles/figure/DNA_methylation_dynamics_in_i_B_i_i_hygrometrica_i_plants_during_acclimation_and_responding_to_rapid_dehydration_stress_/14522305 doi:10.1371/journal.pgen.1009549.g003 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1371/journal.pgen.1009549.g003 |
_version_ |
1766397711299379200 |