Data_Sheet_4_Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites.pdf
While interspecific variation in microbiome composition can often be readily explained by factors such as host species identity, there is still limited knowledge of how microbiomes vary at scales lower than the species level (e.g., between individuals or populations). Here, we evaluated variation in...
Main Authors: | , , , , |
---|---|
Format: | Dataset |
Language: | unknown |
Published: |
2021
|
Subjects: | |
Online Access: | https://doi.org/10.3389/fmicb.2021.642543.s004 |
id |
ftsmithonian:oai:figshare.com:article/14429753 |
---|---|
record_format |
openpolar |
spelling |
ftsmithonian:oai:figshare.com:article/14429753 2023-05-15T18:03:47+02:00 Data_Sheet_4_Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites.pdf Jorge Doña (3243612) Stephany Virrueta Herrera (8391591) Tommi Nyman (680786) Mervi Kunnasranta (740810) Kevin P. Johnson (7905608) 2021-04-16T04:26:40Z https://doi.org/10.3389/fmicb.2021.642543.s004 unknown https://figshare.com/articles/dataset/Data_Sheet_4_Patterns_of_Microbiome_Variation_Among_Infrapopulations_of_Permanent_Bloodsucking_Parasites_pdf/14429753 doi:10.3389/fmicb.2021.642543.s004 CC BY 4.0 CC-BY Microbiology Microbial Genetics Microbial Ecology Mycology genome-resolved metagenomics host-symbiont intraspecific variation lice microbiota shotgun metagenomics symbiont Dataset 2021 ftsmithonian https://doi.org/10.3389/fmicb.2021.642543.s004 2021-05-05T18:17:19Z While interspecific variation in microbiome composition can often be readily explained by factors such as host species identity, there is still limited knowledge of how microbiomes vary at scales lower than the species level (e.g., between individuals or populations). Here, we evaluated variation in microbiome composition of individual parasites among infrapopulations (i.e., populations of parasites of the same species living on a single host individual). To address this question, we used genome-resolved and shotgun metagenomic data of 17 infrapopulations (balanced design) of the permanent, bloodsucking seal louse Echinophthirius horridus sampled from individual Saimaa ringed seals Pusa hispida saimensis. Both genome-resolved and read-based metagenomic classification approaches consistently show that parasite infrapopulation identity is a significant factor that explains both qualitative and quantitative patterns of microbiome variation at the intraspecific level. This study contributes to the general understanding of the factors driving patterns of intraspecific variation in microbiome composition, especially of bloodsucking parasites, and has implications for understanding how well-known processes occurring at higher taxonomic levels, such as phylosymbiosis, might arise in these systems. Dataset Pusa hispida Unknown |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
ftsmithonian |
language |
unknown |
topic |
Microbiology Microbial Genetics Microbial Ecology Mycology genome-resolved metagenomics host-symbiont intraspecific variation lice microbiota shotgun metagenomics symbiont |
spellingShingle |
Microbiology Microbial Genetics Microbial Ecology Mycology genome-resolved metagenomics host-symbiont intraspecific variation lice microbiota shotgun metagenomics symbiont Jorge Doña (3243612) Stephany Virrueta Herrera (8391591) Tommi Nyman (680786) Mervi Kunnasranta (740810) Kevin P. Johnson (7905608) Data_Sheet_4_Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites.pdf |
topic_facet |
Microbiology Microbial Genetics Microbial Ecology Mycology genome-resolved metagenomics host-symbiont intraspecific variation lice microbiota shotgun metagenomics symbiont |
description |
While interspecific variation in microbiome composition can often be readily explained by factors such as host species identity, there is still limited knowledge of how microbiomes vary at scales lower than the species level (e.g., between individuals or populations). Here, we evaluated variation in microbiome composition of individual parasites among infrapopulations (i.e., populations of parasites of the same species living on a single host individual). To address this question, we used genome-resolved and shotgun metagenomic data of 17 infrapopulations (balanced design) of the permanent, bloodsucking seal louse Echinophthirius horridus sampled from individual Saimaa ringed seals Pusa hispida saimensis. Both genome-resolved and read-based metagenomic classification approaches consistently show that parasite infrapopulation identity is a significant factor that explains both qualitative and quantitative patterns of microbiome variation at the intraspecific level. This study contributes to the general understanding of the factors driving patterns of intraspecific variation in microbiome composition, especially of bloodsucking parasites, and has implications for understanding how well-known processes occurring at higher taxonomic levels, such as phylosymbiosis, might arise in these systems. |
format |
Dataset |
author |
Jorge Doña (3243612) Stephany Virrueta Herrera (8391591) Tommi Nyman (680786) Mervi Kunnasranta (740810) Kevin P. Johnson (7905608) |
author_facet |
Jorge Doña (3243612) Stephany Virrueta Herrera (8391591) Tommi Nyman (680786) Mervi Kunnasranta (740810) Kevin P. Johnson (7905608) |
author_sort |
Jorge Doña (3243612) |
title |
Data_Sheet_4_Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites.pdf |
title_short |
Data_Sheet_4_Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites.pdf |
title_full |
Data_Sheet_4_Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites.pdf |
title_fullStr |
Data_Sheet_4_Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites.pdf |
title_full_unstemmed |
Data_Sheet_4_Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites.pdf |
title_sort |
data_sheet_4_patterns of microbiome variation among infrapopulations of permanent bloodsucking parasites.pdf |
publishDate |
2021 |
url |
https://doi.org/10.3389/fmicb.2021.642543.s004 |
genre |
Pusa hispida |
genre_facet |
Pusa hispida |
op_relation |
https://figshare.com/articles/dataset/Data_Sheet_4_Patterns_of_Microbiome_Variation_Among_Infrapopulations_of_Permanent_Bloodsucking_Parasites_pdf/14429753 doi:10.3389/fmicb.2021.642543.s004 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3389/fmicb.2021.642543.s004 |
_version_ |
1766174788768759808 |