Identified outliers before and after disequilibrium pruning among red fox populations across North America.

Describes (per SNP): Location, gene association, and predicted gene function in reference to the dog genome. SNPs are further identified to which sub-dataset they belong; red fox from Alaska and Ontario or red fox only from Alaska: i) identified outlier ii) identified outlier retained after filterin...

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Bibliographic Details
Main Authors: Tristan M. Baecklund (10573715), Jaycee Morrison (10573718), Michael E. Donaldson (4431115), Karsten Hueffer (606200), Christopher J. Kyle (8136867)
Format: Dataset
Language:unknown
Published: 2021
Subjects:
Genetics
Evolutionary Biology
Ecology
Infectious Diseases
Biological Sciences not elsewhere classified
toll-like receptor genes
cause missense mutations
AR variants
30 outlier SNPs
disease control strategies
Vulpes vulpes
rabies variant distributions
fox populations
116 genomic regions
Canis lupus
Alaska
Online Access:https://doi.org/10.1371/journal.pone.0249176.s010
Description
Summary:Describes (per SNP): Location, gene association, and predicted gene function in reference to the dog genome. SNPs are further identified to which sub-dataset they belong; red fox from Alaska and Ontario or red fox only from Alaska: i) identified outlier ii) identified outlier retained after filtering iii) missense SNP with potential to alter protein function and finally if the SNP was identified as an outlier by multiple tests. All BLASTp predicted functions are based upon Canis lupus familiaris unless otherwise specified. (XLSX)

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