Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

• Main Authors: Richard J. Edwards (7949342), Matt A. Field (10315270), James M. Ferguson (8360901), Olga Dudchenko (4599463), Jens Keilwagen (230589), Benjamin D. Rosen (6793109), Gary S. Johnson (9620981), Edward S. Rice (10315273), La Deanna Hillier (10315276), Jillian M. Hammond (10315279), Samuel G. Towarnicki (5937779), Arina Omer (10315282), Ruqayya Khan (10315285), Ksenia Skvortsova (6329072), Ozren Bogdanovic (4533715), Robert A. Zammit (10315288), Erez Lieberman Aiden (6157661), Wesley C. Warren (7165028), J. William O. Ballard (10315291)
• Format: Dataset
• Language: unknown
• Published: 2021
• Subjects: Medicine; Genetics; Evolutionary Biology; Ecology; Environmental Sciences not elsewhere classified; Biological Sciences not elsewhere classified; Canine genome; Domestication; Comparative genomics; Artificial selection; Canis lupus
• Online Access: https://doi.org/10.6084/m9.figshare.14227951.v1

Additional file 2: Supplementary Table 1. Assembly statistics for China assembly stages and other dog genomes used in the study. Supplementary Table 2. Diploidocus statistics and ratings for China scaffolds during tidying. Supplementary Table 3. GeMoMa summary statistics and annotation comparisons. Supplementary Table 4. AMY2B short read mapping and estimated copy number in Basenji dogs. Supplementary Table 5. CanFam_Bas nuclear mitochondrial sequence (NUMT) fragments. Supplementary Table 6. CanFam_Bas nuclear mitochondrial sequences (NUMTs) merging fragments within 8 kb. Supplementary Table 7. Structural variant calls for Basenji and German Shepherd long read data versus three reference genomes. Supplementary Table 8. Dog breeds used for read mapping and SNV analysis. Supplementary Table 9. SRA runs for representative dog breeds from DBVDC.