Additional file 1 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

• Main Authors: Richard J. Edwards (7949342), Matt A. Field (10315270), James M. Ferguson (8360901), Olga Dudchenko (4599463), Jens Keilwagen (230589), Benjamin D. Rosen (6793109), Gary S. Johnson (9620981), Edward S. Rice (10315273), La Deanna Hillier (10315276), Jillian M. Hammond (10315279), Samuel G. Towarnicki (5937779), Arina Omer (10315282), Ruqayya Khan (10315285), Ksenia Skvortsova (6329072), Ozren Bogdanovic (4533715), Robert A. Zammit (10315288), Erez Lieberman Aiden (6157661), Wesley C. Warren (7165028), J. William O. Ballard (10315291)
• Format: Other Non-Article Part of Journal/Newspaper
• Language: unknown
• Published: 2021
• Subjects: Medicine; Genetics; Evolutionary Biology; Ecology; Environmental Sciences not elsewhere classified; Biological Sciences not elsewhere classified; Canine genome; Domestication; Comparative genomics; Artificial selection; Canis lupus
• Online Access: https://doi.org/10.6084/m9.figshare.14227948.v1

Additional file 1: Supplementary Fig. 1. The workflow used to construct the de novo genomes. Supplementary Fig. 2. KAT kmer analysis of China assembly. Supplementary Fig. 3. Identification of putative regulatory elements in basenji’s genome using whole-genome bisulphite sequencing. Supplementary Fig. 4. Predicted copy number of BUSCO Complete genes for three dogs based on long-read read depth. Supplementary Fig. 5. CanFam_Bas nuclear mitochondrial DNA (NUMT) coverage. Supplementary Fig. 6. Comparative short read mapping and single nucleotide variant calling for 58 dog breeds versus three reference genomes: CanFam_Bas, CanFam_GSD (GSD) and CanFam3.1 (BOX).