Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci

Atlantic herring is widespread in North Atlantic and adjacent waters and is one of the most abundant vertebrates on earth. This species is well suited to explore genetic adaptation due to minute genetic differentiation at selectively neutral loci. Here, we report hundreds of loci underlying ecologic...

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Main Authors: Han, Fan, Jamsandekar, Minal, Pettersson, Mats E., Su, Leyi, Fuentes-Pardo, Angela P., Davis, Brian W., Bekkevold, Dorte, Berg, Florian, Casini, Michele, Dahle, Geir, Farrell, Edward D., Folkvord, Arild, Andersson, Leif
Format: Article in Journal/Newspaper
Language:English
Published: 2020
Subjects:
Ecology
Agricultural Science
Evolutionary Biology
North Atlantic
Online Access:https://pub.epsilon.slu.se/19753/
https://pub.epsilon.slu.se/19753/1/han_f_et_al_201221.pdf
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spelling ftslunivuppsala:oai:pub.epsilon.slu.se:19753 2023-05-15T17:31:14+02:00 Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci Han, Fan Jamsandekar, Minal Pettersson, Mats E. Su, Leyi Fuentes-Pardo, Angela P. Davis, Brian W. Bekkevold, Dorte Berg, Florian Casini, Michele Dahle, Geir Farrell, Edward D. Folkvord, Arild Andersson, Leif 2020 application/pdf https://pub.epsilon.slu.se/19753/ https://pub.epsilon.slu.se/19753/1/han_f_et_al_201221.pdf en eng eng https://pub.epsilon.slu.se/19753/1/han_f_et_al_201221.pdf Han, Fan and Jamsandekar, Minal and Pettersson, Mats E. and Su, Leyi and Fuentes-Pardo, Angela P. and Davis, Brian W. and Bekkevold, Dorte and Berg, Florian and Casini, Michele and Dahle, Geir and Farrell, Edward D. and Folkvord, Arild and Andersson, Leif (2020). Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci. eLife. 9 , e61076 [Research article] Ecology Agricultural Science Evolutionary Biology Research article NonPeerReviewed 2020 ftslunivuppsala 2022-01-09T19:15:51Z Atlantic herring is widespread in North Atlantic and adjacent waters and is one of the most abundant vertebrates on earth. This species is well suited to explore genetic adaptation due to minute genetic differentiation at selectively neutral loci. Here, we report hundreds of loci underlying ecological adaptation to different geographic areas and spawning conditions. Four of these represent megabase inversions confirmed by long read sequencing. The genetic architecture underlying ecological adaptation in herring deviates from expectation under a classical infinitesimal model for complex traits because of large shifts in allele frequencies at hundreds of loci under selection. Article in Journal/Newspaper North Atlantic Swedish University of Agricultural Sciences (SLU): Epsilon Open Archive
institution Open Polar
collection Swedish University of Agricultural Sciences (SLU): Epsilon Open Archive
op_collection_id ftslunivuppsala
language English
topic Ecology
Agricultural Science
Evolutionary Biology
spellingShingle Ecology
Agricultural Science
Evolutionary Biology
Han, Fan
Jamsandekar, Minal
Pettersson, Mats E.
Su, Leyi
Fuentes-Pardo, Angela P.
Davis, Brian W.
Bekkevold, Dorte
Berg, Florian
Casini, Michele
Dahle, Geir
Farrell, Edward D.
Folkvord, Arild
Andersson, Leif
Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci
topic_facet Ecology
Agricultural Science
Evolutionary Biology
description Atlantic herring is widespread in North Atlantic and adjacent waters and is one of the most abundant vertebrates on earth. This species is well suited to explore genetic adaptation due to minute genetic differentiation at selectively neutral loci. Here, we report hundreds of loci underlying ecological adaptation to different geographic areas and spawning conditions. Four of these represent megabase inversions confirmed by long read sequencing. The genetic architecture underlying ecological adaptation in herring deviates from expectation under a classical infinitesimal model for complex traits because of large shifts in allele frequencies at hundreds of loci under selection.
format Article in Journal/Newspaper
author Han, Fan
Jamsandekar, Minal
Pettersson, Mats E.
Su, Leyi
Fuentes-Pardo, Angela P.
Davis, Brian W.
Bekkevold, Dorte
Berg, Florian
Casini, Michele
Dahle, Geir
Farrell, Edward D.
Folkvord, Arild
Andersson, Leif
author_facet Han, Fan
Jamsandekar, Minal
Pettersson, Mats E.
Su, Leyi
Fuentes-Pardo, Angela P.
Davis, Brian W.
Bekkevold, Dorte
Berg, Florian
Casini, Michele
Dahle, Geir
Farrell, Edward D.
Folkvord, Arild
Andersson, Leif
author_sort Han, Fan
title Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci
title_short Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci
title_full Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci
title_fullStr Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci
title_full_unstemmed Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci
title_sort ecological adaptation in atlantic herring is associated with large shifts in allele frequencies at hundreds of loci
publishDate 2020
url https://pub.epsilon.slu.se/19753/
https://pub.epsilon.slu.se/19753/1/han_f_et_al_201221.pdf
genre North Atlantic
genre_facet North Atlantic
op_relation https://pub.epsilon.slu.se/19753/1/han_f_et_al_201221.pdf
Han, Fan and Jamsandekar, Minal and Pettersson, Mats E. and Su, Leyi and Fuentes-Pardo, Angela P. and Davis, Brian W. and Bekkevold, Dorte and Berg, Florian and Casini, Michele and Dahle, Geir and Farrell, Edward D. and Folkvord, Arild and Andersson, Leif (2020). Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci. eLife. 9 , e61076 [Research article]
_version_ 1766128700556836864

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