Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities
Understanding the role of interspecific interactions in shaping ecological communities is one of the central goals in community ecology. In fungal communities, measuring interspecific interactions directly is challenging because these communities are composed of large numbers of species, many of whi...
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ftslunivuppsala:oai:pub.epsilon.slu.se:17417 2023-05-15T14:54:19+02:00 Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities Abrego, Nerea Roslin, Tomas Huotari, Tea Tack, Ayco J. M. Lindahl, Björn Tikhonov, Gleb Somervuo, Panu Schmidt, Niels Martin Ovaskainen, Otso 2020 application/pdf https://pub.epsilon.slu.se/17417/ https://pub.epsilon.slu.se/17417/1/abrego_n_et_al_200819.pdf en eng eng https://pub.epsilon.slu.se/17417/1/abrego_n_et_al_200819.pdf Abrego, Nerea and Roslin, Tomas and Huotari, Tea and Tack, Ayco J. M. and Lindahl, Björn and Tikhonov, Gleb and Somervuo, Panu and Schmidt, Niels Martin and Ovaskainen, Otso (2020). Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities. Molecular Ecology. 29 , 2736-2746 [Research article] Ecology Research article NonPeerReviewed 2020 ftslunivuppsala 2022-01-09T19:15:20Z Understanding the role of interspecific interactions in shaping ecological communities is one of the central goals in community ecology. In fungal communities, measuring interspecific interactions directly is challenging because these communities are composed of large numbers of species, many of which are unculturable. An indirect way of assessing the role of interspecific interactions in determining community structure is to identify the species co-occurrences that are not constrained by environmental conditions. In this study, we investigated co-occurrences among root-associated fungi, asking whether fungi co-occur more or less strongly than expected based on the environmental conditions and the host plant species examined. We generated molecular data on root-associated fungi of five plant species evenly sampled along an elevational gradient at a high arctic site. We analysed the data using a joint species distribution modelling approach that allowed us to identify those co-occurrences that could be explained by the environmental conditions and the host plant species, as well as those co-occurrences that remained unexplained and thus more probably reflect interactive associations. Our results indicate that not only negative but also positive interactions play an important role in shaping microbial communities in arctic plant roots. In particular, we found that mycorrhizal fungi are especially prone to positively co-occur with other fungal species. Our results bring new understanding to the structure of arctic interaction networks by suggesting that interactions among root-associated fungi are predominantly positive. Article in Journal/Newspaper Arctic Swedish University of Agricultural Sciences (SLU): Epsilon Open Archive Arctic |
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Open Polar |
collection |
Swedish University of Agricultural Sciences (SLU): Epsilon Open Archive |
op_collection_id |
ftslunivuppsala |
language |
English |
topic |
Ecology |
spellingShingle |
Ecology Abrego, Nerea Roslin, Tomas Huotari, Tea Tack, Ayco J. M. Lindahl, Björn Tikhonov, Gleb Somervuo, Panu Schmidt, Niels Martin Ovaskainen, Otso Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities |
topic_facet |
Ecology |
description |
Understanding the role of interspecific interactions in shaping ecological communities is one of the central goals in community ecology. In fungal communities, measuring interspecific interactions directly is challenging because these communities are composed of large numbers of species, many of which are unculturable. An indirect way of assessing the role of interspecific interactions in determining community structure is to identify the species co-occurrences that are not constrained by environmental conditions. In this study, we investigated co-occurrences among root-associated fungi, asking whether fungi co-occur more or less strongly than expected based on the environmental conditions and the host plant species examined. We generated molecular data on root-associated fungi of five plant species evenly sampled along an elevational gradient at a high arctic site. We analysed the data using a joint species distribution modelling approach that allowed us to identify those co-occurrences that could be explained by the environmental conditions and the host plant species, as well as those co-occurrences that remained unexplained and thus more probably reflect interactive associations. Our results indicate that not only negative but also positive interactions play an important role in shaping microbial communities in arctic plant roots. In particular, we found that mycorrhizal fungi are especially prone to positively co-occur with other fungal species. Our results bring new understanding to the structure of arctic interaction networks by suggesting that interactions among root-associated fungi are predominantly positive. |
format |
Article in Journal/Newspaper |
author |
Abrego, Nerea Roslin, Tomas Huotari, Tea Tack, Ayco J. M. Lindahl, Björn Tikhonov, Gleb Somervuo, Panu Schmidt, Niels Martin Ovaskainen, Otso |
author_facet |
Abrego, Nerea Roslin, Tomas Huotari, Tea Tack, Ayco J. M. Lindahl, Björn Tikhonov, Gleb Somervuo, Panu Schmidt, Niels Martin Ovaskainen, Otso |
author_sort |
Abrego, Nerea |
title |
Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities |
title_short |
Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities |
title_full |
Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities |
title_fullStr |
Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities |
title_full_unstemmed |
Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities |
title_sort |
accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities |
publishDate |
2020 |
url |
https://pub.epsilon.slu.se/17417/ https://pub.epsilon.slu.se/17417/1/abrego_n_et_al_200819.pdf |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic |
genre_facet |
Arctic |
op_relation |
https://pub.epsilon.slu.se/17417/1/abrego_n_et_al_200819.pdf Abrego, Nerea and Roslin, Tomas and Huotari, Tea and Tack, Ayco J. M. and Lindahl, Björn and Tikhonov, Gleb and Somervuo, Panu and Schmidt, Niels Martin and Ovaskainen, Otso (2020). Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities. Molecular Ecology. 29 , 2736-2746 [Research article] |
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1766326035083689984 |