Automatic determination of heart rates from microscopy videos of early life stages of fish
Toxic effects of organic hydrophobic contaminants include impacts on fish heart rate (HR) and cardiac functioning. Thus, in ecotoxicology as well as aquaculture and even medicine, fish heart functioning plays an important role in application areas. The aim of this study was to assemble a pipeline of...
Published in: | Journal of Toxicology and Environmental Health, Part A |
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Online Access: | http://hdl.handle.net/11250/2488770 https://doi.org/10.1080/15287394.2017.1352212 |
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ftsintef:oai:sintef.brage.unit.no:11250/2488770 2024-09-15T17:55:28+00:00 Automatic determination of heart rates from microscopy videos of early life stages of fish Nepstad, Raymond Davies, Emlyn John Altin, Dag Nordtug, Trond Hansen, Bjørn Henrik 2017-08-29 application/pdf http://hdl.handle.net/11250/2488770 https://doi.org/10.1080/15287394.2017.1352212 eng eng Norges forskningsråd: 267820 Norges forskningsråd: 243720 Journal of Toxicology and Environmental Health, Part A. 2017, 80 (16-18), 932-940. urn:issn:1528-7394 http://hdl.handle.net/11250/2488770 https://doi.org/10.1080/15287394.2017.1352212 cristin:1489795 Attribution-NonCommercial-NoDerivatives 4.0 Internasjonal http://creativecommons.org/licenses/by-nc-nd/4.0/deed.no Accepted manuscript © The Author(s) 2017 932-940 80 Journal of Toxicology and Environmental Health, Part A 16-18 Imageprocessing ecotoxicology cod tuna haddock heart rate Journal article Peer reviewed 2017 ftsintef https://doi.org/10.1080/15287394.2017.1352212 2024-08-30T03:27:11Z Toxic effects of organic hydrophobic contaminants include impacts on fish heart rate (HR) and cardiac functioning. Thus, in ecotoxicology as well as aquaculture and even medicine, fish heart functioning plays an important role in application areas. The aim of this study was to assemble a pipeline of image processing and statistical techniques to extract HR information from microscopy videos of the embryo and larval stages of three species of fish (Atlantic cod, haddock, and Atlantic bluefin tuna). The method enables automatic processing for a large number of individuals, saving a significant amount of time compared with manual processing, while simultaneously eliminating the type of errors such a manual process might incur. acceptedVersion Article in Journal/Newspaper atlantic cod SINTEF Open Journal of Toxicology and Environmental Health, Part A 80 16-18 932 940 |
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language |
English |
topic |
Imageprocessing ecotoxicology cod tuna haddock heart rate |
spellingShingle |
Imageprocessing ecotoxicology cod tuna haddock heart rate Nepstad, Raymond Davies, Emlyn John Altin, Dag Nordtug, Trond Hansen, Bjørn Henrik Automatic determination of heart rates from microscopy videos of early life stages of fish |
topic_facet |
Imageprocessing ecotoxicology cod tuna haddock heart rate |
description |
Toxic effects of organic hydrophobic contaminants include impacts on fish heart rate (HR) and cardiac functioning. Thus, in ecotoxicology as well as aquaculture and even medicine, fish heart functioning plays an important role in application areas. The aim of this study was to assemble a pipeline of image processing and statistical techniques to extract HR information from microscopy videos of the embryo and larval stages of three species of fish (Atlantic cod, haddock, and Atlantic bluefin tuna). The method enables automatic processing for a large number of individuals, saving a significant amount of time compared with manual processing, while simultaneously eliminating the type of errors such a manual process might incur. acceptedVersion |
format |
Article in Journal/Newspaper |
author |
Nepstad, Raymond Davies, Emlyn John Altin, Dag Nordtug, Trond Hansen, Bjørn Henrik |
author_facet |
Nepstad, Raymond Davies, Emlyn John Altin, Dag Nordtug, Trond Hansen, Bjørn Henrik |
author_sort |
Nepstad, Raymond |
title |
Automatic determination of heart rates from microscopy videos of early life stages of fish |
title_short |
Automatic determination of heart rates from microscopy videos of early life stages of fish |
title_full |
Automatic determination of heart rates from microscopy videos of early life stages of fish |
title_fullStr |
Automatic determination of heart rates from microscopy videos of early life stages of fish |
title_full_unstemmed |
Automatic determination of heart rates from microscopy videos of early life stages of fish |
title_sort |
automatic determination of heart rates from microscopy videos of early life stages of fish |
publishDate |
2017 |
url |
http://hdl.handle.net/11250/2488770 https://doi.org/10.1080/15287394.2017.1352212 |
genre |
atlantic cod |
genre_facet |
atlantic cod |
op_source |
932-940 80 Journal of Toxicology and Environmental Health, Part A 16-18 |
op_relation |
Norges forskningsråd: 267820 Norges forskningsråd: 243720 Journal of Toxicology and Environmental Health, Part A. 2017, 80 (16-18), 932-940. urn:issn:1528-7394 http://hdl.handle.net/11250/2488770 https://doi.org/10.1080/15287394.2017.1352212 cristin:1489795 |
op_rights |
Attribution-NonCommercial-NoDerivatives 4.0 Internasjonal http://creativecommons.org/licenses/by-nc-nd/4.0/deed.no Accepted manuscript © The Author(s) 2017 |
op_doi |
https://doi.org/10.1080/15287394.2017.1352212 |
container_title |
Journal of Toxicology and Environmental Health, Part A |
container_volume |
80 |
container_issue |
16-18 |
container_start_page |
932 |
op_container_end_page |
940 |
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1810431757797818368 |