Supplementary Information from Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals
The narrow-headed vole, collared lemming and common vole were the most abundant small mammal species across the Eurasian Late Pleistocene steppe-tundra environment. Previous ancient DNA studies of the collared lemming and common vole have revealed dynamic population histories shaped by climatic fluc...
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ftroysocietyfig:oai:figshare.com:article/22065409 2023-05-15T15:56:30+02:00 Supplementary Information from Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals Mateusz Baca Danijela Popović Alexander K. Agadzhanyan Katarzyna Baca Nicholas J. Conard Helen Fewlass Thomas Filek Michał Golubiński Ivan Horáček Monika V. Knul Magdalena Krajcarz Maria Krokhaleva Loïc Lebreton Anna Lemanik Lutz C. Maul Doris Nagel Pierre Noiret Jérome Primault Leonid Rekovets Sara E. Rhodes Aurélien Royer Natalia V. Serdyuk Marie Soressi John R. Stewart Tatiana Strukova Sahra Talamo Jarosław Wilczyński Adam Nadachowski 2023-02-10T03:13:52Z https://doi.org/10.6084/m9.figshare.22065409.v1 https://figshare.com/articles/dataset/Supplementary_Information_from_Ancient_DNA_of_narrow-headed_vole_reveal_common_features_of_the_Late_Pleistocene_population_dynamics_in_cold-adapted_small_mammals/22065409 unknown doi:10.6084/m9.figshare.22065409.v1 https://figshare.com/articles/dataset/Supplementary_Information_from_Ancient_DNA_of_narrow-headed_vole_reveal_common_features_of_the_Late_Pleistocene_population_dynamics_in_cold-adapted_small_mammals/22065409 CC BY 4.0 CC-BY Evolutionary Biology Ecology paleoclimate climate change interstadials habitat mitochondrial DNA Pleistocene Dataset 2023 ftroysocietyfig https://doi.org/10.6084/m9.figshare.22065409.v1 2023-02-16T00:06:52Z The narrow-headed vole, collared lemming and common vole were the most abundant small mammal species across the Eurasian Late Pleistocene steppe-tundra environment. Previous ancient DNA studies of the collared lemming and common vole have revealed dynamic population histories shaped by climatic fluctuations. To investigate the extent to which species with similar adaptations share common evolutionary histories, we generated a dataset comprised the mitochondrial genomes of 139 ancient and 6 modern narrow-headed voles from several sites across Europe and northwestern Asia covering approximately the last 100 thousand years (kyr). We inferred Bayesian time-aware phylogenies using 11 radiocarbon-dated samples to calibrate the molecular clock. Divergence of the main mtDNA lineages across the three species occurred during marine isotope stages (MIS) 7 and MIS 5, suggesting a common response of species adapted to open habitat during interglacials. We identified several time-structured mtDNA lineages in European narrow-headed vole, suggesting lineage turnover. The timing of some of these turnovers was synchronous across the three species, allowing us to identify the main drivers of the Late Pleistocene dynamics of steppe- and cold-adapted species. Dataset Common vole Tundra The Royal Society: Figshare |
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Open Polar |
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The Royal Society: Figshare |
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ftroysocietyfig |
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unknown |
topic |
Evolutionary Biology Ecology paleoclimate climate change interstadials habitat mitochondrial DNA Pleistocene |
spellingShingle |
Evolutionary Biology Ecology paleoclimate climate change interstadials habitat mitochondrial DNA Pleistocene Mateusz Baca Danijela Popović Alexander K. Agadzhanyan Katarzyna Baca Nicholas J. Conard Helen Fewlass Thomas Filek Michał Golubiński Ivan Horáček Monika V. Knul Magdalena Krajcarz Maria Krokhaleva Loïc Lebreton Anna Lemanik Lutz C. Maul Doris Nagel Pierre Noiret Jérome Primault Leonid Rekovets Sara E. Rhodes Aurélien Royer Natalia V. Serdyuk Marie Soressi John R. Stewart Tatiana Strukova Sahra Talamo Jarosław Wilczyński Adam Nadachowski Supplementary Information from Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals |
topic_facet |
Evolutionary Biology Ecology paleoclimate climate change interstadials habitat mitochondrial DNA Pleistocene |
description |
The narrow-headed vole, collared lemming and common vole were the most abundant small mammal species across the Eurasian Late Pleistocene steppe-tundra environment. Previous ancient DNA studies of the collared lemming and common vole have revealed dynamic population histories shaped by climatic fluctuations. To investigate the extent to which species with similar adaptations share common evolutionary histories, we generated a dataset comprised the mitochondrial genomes of 139 ancient and 6 modern narrow-headed voles from several sites across Europe and northwestern Asia covering approximately the last 100 thousand years (kyr). We inferred Bayesian time-aware phylogenies using 11 radiocarbon-dated samples to calibrate the molecular clock. Divergence of the main mtDNA lineages across the three species occurred during marine isotope stages (MIS) 7 and MIS 5, suggesting a common response of species adapted to open habitat during interglacials. We identified several time-structured mtDNA lineages in European narrow-headed vole, suggesting lineage turnover. The timing of some of these turnovers was synchronous across the three species, allowing us to identify the main drivers of the Late Pleistocene dynamics of steppe- and cold-adapted species. |
format |
Dataset |
author |
Mateusz Baca Danijela Popović Alexander K. Agadzhanyan Katarzyna Baca Nicholas J. Conard Helen Fewlass Thomas Filek Michał Golubiński Ivan Horáček Monika V. Knul Magdalena Krajcarz Maria Krokhaleva Loïc Lebreton Anna Lemanik Lutz C. Maul Doris Nagel Pierre Noiret Jérome Primault Leonid Rekovets Sara E. Rhodes Aurélien Royer Natalia V. Serdyuk Marie Soressi John R. Stewart Tatiana Strukova Sahra Talamo Jarosław Wilczyński Adam Nadachowski |
author_facet |
Mateusz Baca Danijela Popović Alexander K. Agadzhanyan Katarzyna Baca Nicholas J. Conard Helen Fewlass Thomas Filek Michał Golubiński Ivan Horáček Monika V. Knul Magdalena Krajcarz Maria Krokhaleva Loïc Lebreton Anna Lemanik Lutz C. Maul Doris Nagel Pierre Noiret Jérome Primault Leonid Rekovets Sara E. Rhodes Aurélien Royer Natalia V. Serdyuk Marie Soressi John R. Stewart Tatiana Strukova Sahra Talamo Jarosław Wilczyński Adam Nadachowski |
author_sort |
Mateusz Baca |
title |
Supplementary Information from Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals |
title_short |
Supplementary Information from Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals |
title_full |
Supplementary Information from Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals |
title_fullStr |
Supplementary Information from Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals |
title_full_unstemmed |
Supplementary Information from Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals |
title_sort |
supplementary information from ancient dna of narrow-headed vole reveal common features of the late pleistocene population dynamics in cold-adapted small mammals |
publishDate |
2023 |
url |
https://doi.org/10.6084/m9.figshare.22065409.v1 https://figshare.com/articles/dataset/Supplementary_Information_from_Ancient_DNA_of_narrow-headed_vole_reveal_common_features_of_the_Late_Pleistocene_population_dynamics_in_cold-adapted_small_mammals/22065409 |
genre |
Common vole Tundra |
genre_facet |
Common vole Tundra |
op_relation |
doi:10.6084/m9.figshare.22065409.v1 https://figshare.com/articles/dataset/Supplementary_Information_from_Ancient_DNA_of_narrow-headed_vole_reveal_common_features_of_the_Late_Pleistocene_population_dynamics_in_cold-adapted_small_mammals/22065409 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.22065409.v1 |
_version_ |
1766391917824704512 |