Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails

Table S1. Transcriptome assembly statistics of Atlanta ariejansseni reported using Trinity v2.8.4, Quast (Galaxy version 4.6.3), and BUSCO v3 before and after filtering for potential contaminant contigs. The Atlanta ariejansseni de novo transcriptome assembly consisted of 28,512 predicted ‘genes’ (h...

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Main Authors: Deborah Wall-Palmer, Lisette Mekkes, Paula Ramos-Silva, Linda K. Dämmer, Erica Goetze, Karel Bakker, Elza Duijm, Katja T. C. A. Peijnenburg
Format: Other Non-Article Part of Journal/Newspaper
Language:unknown
Published: 2021
Subjects:
Online Access:https://doi.org/10.6084/m9.figshare.15048423.v2
https://figshare.com/articles/journal_contribution/Table_of_transcriptome_assembly_statistics_Table_of_transcriptome_functional_annotation_from_The_impacts_of_past_present_and_future_ocean_chemistry_on_predatory_planktonic_snails/15048423
id ftroysocietyfig:oai:figshare.com:article/15048423
record_format openpolar
spelling ftroysocietyfig:oai:figshare.com:article/15048423 2023-05-15T17:50:46+02:00 Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails Deborah Wall-Palmer Lisette Mekkes Paula Ramos-Silva Linda K. Dämmer Erica Goetze Karel Bakker Elza Duijm Katja T. C. A. Peijnenburg 2021-07-24T17:43:15Z https://doi.org/10.6084/m9.figshare.15048423.v2 https://figshare.com/articles/journal_contribution/Table_of_transcriptome_assembly_statistics_Table_of_transcriptome_functional_annotation_from_The_impacts_of_past_present_and_future_ocean_chemistry_on_predatory_planktonic_snails/15048423 unknown doi:10.6084/m9.figshare.15048423.v2 https://figshare.com/articles/journal_contribution/Table_of_transcriptome_assembly_statistics_Table_of_transcriptome_functional_annotation_from_The_impacts_of_past_present_and_future_ocean_chemistry_on_predatory_planktonic_snails/15048423 CC BY 4.0 CC-BY Oceanography Developmental Biology Bioinformatics atlantidae ocean acidification calcification calcein indicator gene expression micro-CT Text Journal contribution 2021 ftroysocietyfig https://doi.org/10.6084/m9.figshare.15048423.v2 2022-01-01T19:09:37Z Table S1. Transcriptome assembly statistics of Atlanta ariejansseni reported using Trinity v2.8.4, Quast (Galaxy version 4.6.3), and BUSCO v3 before and after filtering for potential contaminant contigs. The Atlanta ariejansseni de novo transcriptome assembly consisted of 28,512 predicted ‘genes’ (here genes as defined by [61]). Giving overall good quality and 93.5% completeness, the A. ariejansseni transcriptome is suitable for differential expression analysis, and comparable to prior pteropod de novo transcriptomes [22,23].; Table S4. Transcriptome functional annotation of Atlanta ariejansseni using Trinotate: summary of the strategies and statistics. Other Non-Article Part of Journal/Newspaper Ocean acidification The Royal Society: Figshare
institution Open Polar
collection The Royal Society: Figshare
op_collection_id ftroysocietyfig
language unknown
topic Oceanography
Developmental Biology
Bioinformatics
atlantidae
ocean acidification
calcification
calcein indicator
gene expression
micro-CT
spellingShingle Oceanography
Developmental Biology
Bioinformatics
atlantidae
ocean acidification
calcification
calcein indicator
gene expression
micro-CT
Deborah Wall-Palmer
Lisette Mekkes
Paula Ramos-Silva
Linda K. Dämmer
Erica Goetze
Karel Bakker
Elza Duijm
Katja T. C. A. Peijnenburg
Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails
topic_facet Oceanography
Developmental Biology
Bioinformatics
atlantidae
ocean acidification
calcification
calcein indicator
gene expression
micro-CT
description Table S1. Transcriptome assembly statistics of Atlanta ariejansseni reported using Trinity v2.8.4, Quast (Galaxy version 4.6.3), and BUSCO v3 before and after filtering for potential contaminant contigs. The Atlanta ariejansseni de novo transcriptome assembly consisted of 28,512 predicted ‘genes’ (here genes as defined by [61]). Giving overall good quality and 93.5% completeness, the A. ariejansseni transcriptome is suitable for differential expression analysis, and comparable to prior pteropod de novo transcriptomes [22,23].; Table S4. Transcriptome functional annotation of Atlanta ariejansseni using Trinotate: summary of the strategies and statistics.
format Other Non-Article Part of Journal/Newspaper
author Deborah Wall-Palmer
Lisette Mekkes
Paula Ramos-Silva
Linda K. Dämmer
Erica Goetze
Karel Bakker
Elza Duijm
Katja T. C. A. Peijnenburg
author_facet Deborah Wall-Palmer
Lisette Mekkes
Paula Ramos-Silva
Linda K. Dämmer
Erica Goetze
Karel Bakker
Elza Duijm
Katja T. C. A. Peijnenburg
author_sort Deborah Wall-Palmer
title Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails
title_short Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails
title_full Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails
title_fullStr Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails
title_full_unstemmed Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails
title_sort table of transcriptome assembly statistics; table of transcriptome functional annotation from the impacts of past, present and future ocean chemistry on predatory planktonic snails
publishDate 2021
url https://doi.org/10.6084/m9.figshare.15048423.v2
https://figshare.com/articles/journal_contribution/Table_of_transcriptome_assembly_statistics_Table_of_transcriptome_functional_annotation_from_The_impacts_of_past_present_and_future_ocean_chemistry_on_predatory_planktonic_snails/15048423
genre Ocean acidification
genre_facet Ocean acidification
op_relation doi:10.6084/m9.figshare.15048423.v2
https://figshare.com/articles/journal_contribution/Table_of_transcriptome_assembly_statistics_Table_of_transcriptome_functional_annotation_from_The_impacts_of_past_present_and_future_ocean_chemistry_on_predatory_planktonic_snails/15048423
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.6084/m9.figshare.15048423.v2
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