Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails
Table S1. Transcriptome assembly statistics of Atlanta ariejansseni reported using Trinity v2.8.4, Quast (Galaxy version 4.6.3), and BUSCO v3 before and after filtering for potential contaminant contigs. The Atlanta ariejansseni de novo transcriptome assembly consisted of 28,512 predicted ‘genes’ (h...
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ftroysocietyfig:oai:figshare.com:article/15048423 2023-05-15T17:50:46+02:00 Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails Deborah Wall-Palmer Lisette Mekkes Paula Ramos-Silva Linda K. Dämmer Erica Goetze Karel Bakker Elza Duijm Katja T. C. A. Peijnenburg 2021-07-24T17:43:15Z https://doi.org/10.6084/m9.figshare.15048423.v2 https://figshare.com/articles/journal_contribution/Table_of_transcriptome_assembly_statistics_Table_of_transcriptome_functional_annotation_from_The_impacts_of_past_present_and_future_ocean_chemistry_on_predatory_planktonic_snails/15048423 unknown doi:10.6084/m9.figshare.15048423.v2 https://figshare.com/articles/journal_contribution/Table_of_transcriptome_assembly_statistics_Table_of_transcriptome_functional_annotation_from_The_impacts_of_past_present_and_future_ocean_chemistry_on_predatory_planktonic_snails/15048423 CC BY 4.0 CC-BY Oceanography Developmental Biology Bioinformatics atlantidae ocean acidification calcification calcein indicator gene expression micro-CT Text Journal contribution 2021 ftroysocietyfig https://doi.org/10.6084/m9.figshare.15048423.v2 2022-01-01T19:09:37Z Table S1. Transcriptome assembly statistics of Atlanta ariejansseni reported using Trinity v2.8.4, Quast (Galaxy version 4.6.3), and BUSCO v3 before and after filtering for potential contaminant contigs. The Atlanta ariejansseni de novo transcriptome assembly consisted of 28,512 predicted ‘genes’ (here genes as defined by [61]). Giving overall good quality and 93.5% completeness, the A. ariejansseni transcriptome is suitable for differential expression analysis, and comparable to prior pteropod de novo transcriptomes [22,23].; Table S4. Transcriptome functional annotation of Atlanta ariejansseni using Trinotate: summary of the strategies and statistics. Other Non-Article Part of Journal/Newspaper Ocean acidification The Royal Society: Figshare |
institution |
Open Polar |
collection |
The Royal Society: Figshare |
op_collection_id |
ftroysocietyfig |
language |
unknown |
topic |
Oceanography Developmental Biology Bioinformatics atlantidae ocean acidification calcification calcein indicator gene expression micro-CT |
spellingShingle |
Oceanography Developmental Biology Bioinformatics atlantidae ocean acidification calcification calcein indicator gene expression micro-CT Deborah Wall-Palmer Lisette Mekkes Paula Ramos-Silva Linda K. Dämmer Erica Goetze Karel Bakker Elza Duijm Katja T. C. A. Peijnenburg Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails |
topic_facet |
Oceanography Developmental Biology Bioinformatics atlantidae ocean acidification calcification calcein indicator gene expression micro-CT |
description |
Table S1. Transcriptome assembly statistics of Atlanta ariejansseni reported using Trinity v2.8.4, Quast (Galaxy version 4.6.3), and BUSCO v3 before and after filtering for potential contaminant contigs. The Atlanta ariejansseni de novo transcriptome assembly consisted of 28,512 predicted ‘genes’ (here genes as defined by [61]). Giving overall good quality and 93.5% completeness, the A. ariejansseni transcriptome is suitable for differential expression analysis, and comparable to prior pteropod de novo transcriptomes [22,23].; Table S4. Transcriptome functional annotation of Atlanta ariejansseni using Trinotate: summary of the strategies and statistics. |
format |
Other Non-Article Part of Journal/Newspaper |
author |
Deborah Wall-Palmer Lisette Mekkes Paula Ramos-Silva Linda K. Dämmer Erica Goetze Karel Bakker Elza Duijm Katja T. C. A. Peijnenburg |
author_facet |
Deborah Wall-Palmer Lisette Mekkes Paula Ramos-Silva Linda K. Dämmer Erica Goetze Karel Bakker Elza Duijm Katja T. C. A. Peijnenburg |
author_sort |
Deborah Wall-Palmer |
title |
Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails |
title_short |
Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails |
title_full |
Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails |
title_fullStr |
Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails |
title_full_unstemmed |
Table of transcriptome assembly statistics; Table of transcriptome functional annotation from The impacts of past, present and future ocean chemistry on predatory planktonic snails |
title_sort |
table of transcriptome assembly statistics; table of transcriptome functional annotation from the impacts of past, present and future ocean chemistry on predatory planktonic snails |
publishDate |
2021 |
url |
https://doi.org/10.6084/m9.figshare.15048423.v2 https://figshare.com/articles/journal_contribution/Table_of_transcriptome_assembly_statistics_Table_of_transcriptome_functional_annotation_from_The_impacts_of_past_present_and_future_ocean_chemistry_on_predatory_planktonic_snails/15048423 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
doi:10.6084/m9.figshare.15048423.v2 https://figshare.com/articles/journal_contribution/Table_of_transcriptome_assembly_statistics_Table_of_transcriptome_functional_annotation_from_The_impacts_of_past_present_and_future_ocean_chemistry_on_predatory_planktonic_snails/15048423 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.15048423.v2 |
_version_ |
1766157651156140032 |