Supplementary data: Details of the conserved hairpins of M. galloprovincialis (MGR), P. fucata (PFU), R. philippinarum (RPH), S. broughtonii (SBR) and T. granosa (TGR) from Digging into bivalve miRNAomes: between conservation and innovation
Bivalves are a diverse mollusc group of economic and ecological importance. An evident resilience to pollution, parasites and extreme environments makes some bivalve species important models for studying adaptation and immunity. Despite substantial progress in sequencing projects of bivalves, inform...
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2021
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Online Access: | https://doi.org/10.6084/m9.figshare.14151723.v1 https://figshare.com/articles/dataset/Supplementary_data_Details_of_the_conserved_hairpins_of_M_galloprovincialis_MGR_P_fucata_PFU_R_philippinarum_RPH_S_broughtonii_SBR_and_T_granosa_TGR_from_Digging_into_bivalve_miRNAomes_between_conservation_and_innovation/14151723 |
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ftroysocietyfig:oai:figshare.com:article/14151723 2023-05-15T15:58:49+02:00 Supplementary data: Details of the conserved hairpins of M. galloprovincialis (MGR), P. fucata (PFU), R. philippinarum (RPH), S. broughtonii (SBR) and T. granosa (TGR) from Digging into bivalve miRNAomes: between conservation and innovation Umberto Rosani Enrico Bortoletto Chang-Ming Bai Beatriz Novoa Antonio Figueras Paola Venier Bastian Fromm 2021-03-03T07:30:33Z https://doi.org/10.6084/m9.figshare.14151723.v1 https://figshare.com/articles/dataset/Supplementary_data_Details_of_the_conserved_hairpins_of_M_galloprovincialis_MGR_P_fucata_PFU_R_philippinarum_RPH_S_broughtonii_SBR_and_T_granosa_TGR_from_Digging_into_bivalve_miRNAomes_between_conservation_and_innovation/14151723 unknown doi:10.6084/m9.figshare.14151723.v1 https://figshare.com/articles/dataset/Supplementary_data_Details_of_the_conserved_hairpins_of_M_galloprovincialis_MGR_P_fucata_PFU_R_philippinarum_RPH_S_broughtonii_SBR_and_T_granosa_TGR_from_Digging_into_bivalve_miRNAomes_between_conservation_and_innovation/14151723 CC BY 4.0 CC-BY Evolutionary Biology Genomics microrna bivalvia mussel blood clam bivalves Dataset 2021 ftroysocietyfig https://doi.org/10.6084/m9.figshare.14151723.v1 2022-01-01T19:14:03Z Bivalves are a diverse mollusc group of economic and ecological importance. An evident resilience to pollution, parasites and extreme environments makes some bivalve species important models for studying adaptation and immunity. Despite substantial progress in sequencing projects of bivalves, information on non-coding genes and gene-regulatory aspects is still lacking. Here, we review the current repertoire of bivalve microRNAs (miRNAs), important regulators of gene expression in Metazoa. We exploited available sncRNA data for Pinctada martensii, Crassostrea gigas, Corbicula fluminea, Tegillarca granosa and Ruditapes philippinarum , and we produced new sncRNA data for two additional bivalves, the Mediterranean mussel Mytilus galloprovincialis and the blood clam Scapharca broughtonii . We found substantial heterogeneity and incorrect annotations of miRNAs; hence, we reannotated conserved miRNA families using recently established criteria for bona fide microRNA annotation. We found 106 miRNA families missing in the previously published bivalve datasets and 89 and 87 miRNA complements were identified in the two additional species. The overall results provide a homogeneous and evolutionary consistent picture of miRNAs in bivalves and enable future comparative studies. The identification of two bivalve-specific miRNA families sheds further light on the complexity of transcription and its regulation in bivalve molluscs.This article is part of the Theo Murphy meeting issue ‘Molluscan genomics: broad insights and future directions for a neglected phylum’. Dataset Crassostrea gigas The Royal Society: Figshare |
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Open Polar |
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The Royal Society: Figshare |
op_collection_id |
ftroysocietyfig |
language |
unknown |
topic |
Evolutionary Biology Genomics microrna bivalvia mussel blood clam bivalves |
spellingShingle |
Evolutionary Biology Genomics microrna bivalvia mussel blood clam bivalves Umberto Rosani Enrico Bortoletto Chang-Ming Bai Beatriz Novoa Antonio Figueras Paola Venier Bastian Fromm Supplementary data: Details of the conserved hairpins of M. galloprovincialis (MGR), P. fucata (PFU), R. philippinarum (RPH), S. broughtonii (SBR) and T. granosa (TGR) from Digging into bivalve miRNAomes: between conservation and innovation |
topic_facet |
Evolutionary Biology Genomics microrna bivalvia mussel blood clam bivalves |
description |
Bivalves are a diverse mollusc group of economic and ecological importance. An evident resilience to pollution, parasites and extreme environments makes some bivalve species important models for studying adaptation and immunity. Despite substantial progress in sequencing projects of bivalves, information on non-coding genes and gene-regulatory aspects is still lacking. Here, we review the current repertoire of bivalve microRNAs (miRNAs), important regulators of gene expression in Metazoa. We exploited available sncRNA data for Pinctada martensii, Crassostrea gigas, Corbicula fluminea, Tegillarca granosa and Ruditapes philippinarum , and we produced new sncRNA data for two additional bivalves, the Mediterranean mussel Mytilus galloprovincialis and the blood clam Scapharca broughtonii . We found substantial heterogeneity and incorrect annotations of miRNAs; hence, we reannotated conserved miRNA families using recently established criteria for bona fide microRNA annotation. We found 106 miRNA families missing in the previously published bivalve datasets and 89 and 87 miRNA complements were identified in the two additional species. The overall results provide a homogeneous and evolutionary consistent picture of miRNAs in bivalves and enable future comparative studies. The identification of two bivalve-specific miRNA families sheds further light on the complexity of transcription and its regulation in bivalve molluscs.This article is part of the Theo Murphy meeting issue ‘Molluscan genomics: broad insights and future directions for a neglected phylum’. |
format |
Dataset |
author |
Umberto Rosani Enrico Bortoletto Chang-Ming Bai Beatriz Novoa Antonio Figueras Paola Venier Bastian Fromm |
author_facet |
Umberto Rosani Enrico Bortoletto Chang-Ming Bai Beatriz Novoa Antonio Figueras Paola Venier Bastian Fromm |
author_sort |
Umberto Rosani |
title |
Supplementary data: Details of the conserved hairpins of M. galloprovincialis (MGR), P. fucata (PFU), R. philippinarum (RPH), S. broughtonii (SBR) and T. granosa (TGR) from Digging into bivalve miRNAomes: between conservation and innovation |
title_short |
Supplementary data: Details of the conserved hairpins of M. galloprovincialis (MGR), P. fucata (PFU), R. philippinarum (RPH), S. broughtonii (SBR) and T. granosa (TGR) from Digging into bivalve miRNAomes: between conservation and innovation |
title_full |
Supplementary data: Details of the conserved hairpins of M. galloprovincialis (MGR), P. fucata (PFU), R. philippinarum (RPH), S. broughtonii (SBR) and T. granosa (TGR) from Digging into bivalve miRNAomes: between conservation and innovation |
title_fullStr |
Supplementary data: Details of the conserved hairpins of M. galloprovincialis (MGR), P. fucata (PFU), R. philippinarum (RPH), S. broughtonii (SBR) and T. granosa (TGR) from Digging into bivalve miRNAomes: between conservation and innovation |
title_full_unstemmed |
Supplementary data: Details of the conserved hairpins of M. galloprovincialis (MGR), P. fucata (PFU), R. philippinarum (RPH), S. broughtonii (SBR) and T. granosa (TGR) from Digging into bivalve miRNAomes: between conservation and innovation |
title_sort |
supplementary data: details of the conserved hairpins of m. galloprovincialis (mgr), p. fucata (pfu), r. philippinarum (rph), s. broughtonii (sbr) and t. granosa (tgr) from digging into bivalve mirnaomes: between conservation and innovation |
publishDate |
2021 |
url |
https://doi.org/10.6084/m9.figshare.14151723.v1 https://figshare.com/articles/dataset/Supplementary_data_Details_of_the_conserved_hairpins_of_M_galloprovincialis_MGR_P_fucata_PFU_R_philippinarum_RPH_S_broughtonii_SBR_and_T_granosa_TGR_from_Digging_into_bivalve_miRNAomes_between_conservation_and_innovation/14151723 |
genre |
Crassostrea gigas |
genre_facet |
Crassostrea gigas |
op_relation |
doi:10.6084/m9.figshare.14151723.v1 https://figshare.com/articles/dataset/Supplementary_data_Details_of_the_conserved_hairpins_of_M_galloprovincialis_MGR_P_fucata_PFU_R_philippinarum_RPH_S_broughtonii_SBR_and_T_granosa_TGR_from_Digging_into_bivalve_miRNAomes_between_conservation_and_innovation/14151723 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.14151723.v1 |
_version_ |
1766394594630565888 |