Full genome sequence analysis of a novel adenovirus from a captive polar bear (Ursus maritimus)

• Published in: Virus Research
• Main Authors: Böszörményi, Kinga P., Podgorski, Iva I., Vidovszky, Márton Z., Sós, Endre, Benkő, Mária, Harrach, Balázs
• Format: Article in Journal/Newspaper
• Language: Croatian
• Published: Elsevier 2020
• Subjects: Microbiology; Genetics; Evolution and Phylogenetics; Ursus maritimus
• Online Access: http://fulir.irb.hr/5291/; http://fulir.irb.hr/5291/1/MS_postprint.pdf; http://fulir.irb.hr/5291/7/Podgorski_Full_genome_sequence1-s2.0.pdf; https://www.sciencedirect.com/science/article/abs/pii/S0168170219306811; https://doi.org/10.1016/j.virusres.2019.197846

The presence of a novel adenovirus (AdV) was detected by PCR and sequencing, in the internal organs of a captive polar bear that had died in the Budapest zoo. The virus content of the samples proved to be high enough to allow for conventional Sanger sequencing on PCR-amplified genomic fragments. With this approach, the sequence of the entire genome of the putative polar bear adenovirus 1 (PBAdV-1) was obtained. Although the genome was found to be short, consisting of 27,952 base pairs merely, with a relatively balanced G + C content of 46.3 %, its organisation corresponded largely to that of a typical mastadenovirus. Every genus-common gene could be identified except that of protein IX. The short E3 region of the PBAdV-1 consisted of two novel, supposedly type-specific ORFs only, whereas no homologue of any of the E3 genes, usually conserved in mastadenoviruses, such as for example that of the 12.5 K protein, were present. In the E4 region, only the highly conserved gene of the 34 K protein was found besides two novel ORFs showing no homology to any known E4 ORFs. In silico sequence analysis revealed putative splicing donor and acceptor sites in the genes of the E1A, IVa2, DNA-dependent DNA polymerase, pTP, 33 K proteins, and also of U exon protein, all being characteristic for mastadenoviruses. Phylogenetic calculations, based on various proteins, further supported that the newly-detected PBAdV is the representative of a new species within the genus Mastadenovirus, and may represent the evolutionary lineage of adenoviruses that coevolved with carnivorans.