Pandemic modelling for regions implementing an elimination strategy

• Published in: Journal of Theoretical Biology
• Main Authors: Hurford, Amy, Martignoni, Maria M., Loredo-Osti, J.C., Anokye, Francis, Arino, Julien, Husain, Bilal Saleh, Gaas, Brian, Watmough, James
• Format: Text
• Language: English
• Published: The Author(s). Published by Elsevier Ltd. 2022
• Subjects: Article; Canada; New Zealand; Newfoundland; Iceland; Prince Edward Island
• Online Access: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9794400/; https://doi.org/10.1016/j.jtbi.2022.111378

During the COVID-19 pandemic, some countries, such as Australia, China, Iceland, New Zealand, Thailand, and Vietnam successfully implemented an elimination strategy, enacting strict border control and periods of lockdowns to end community transmission. Atlantic Canada and Canada’s territories implemented similar policies, and reported long periods with no community cases. In Newfoundland and Labrador (NL), Nova Scotia, and Prince Edward Island a median of 80% or more of daily reported cases were travel-related from July 1, a=2020 to May 31, 2021. With increasing vaccination coverage, it may be appropriate to exit an elimination strategy, but most existing epidemiological frameworks are applicable only to situations where most cases occur in the community, and are not appropriate for regions that have implemented an elimination strategy. To inform the pandemic response in regions that are implementing an elimination strategy, we extend importation modelling to consider post-arrival travel restrictions, and pharmaceutical and non-pharmaceutical interventions in the local community. We find that shortly after the Omicron variant had begun spreading in Canada, the expected daily number of spillovers, infections spread to NL community members from travelers and their close contacts, was higher than any time previously in the pandemic. By December 24, 2021, the expected number of spillovers was 44% higher than the previous high, which occurred in late July 2021 shortly after travel restrictions were first relaxed. We develop a method to assess the characteristics of potential future community outbreaks in regions that are implementing an elimination strategy. We apply this method to predict the effect of variant and vaccination coverage on the size of hypothetical community outbreaks in Mount Pearl, a suburb of the St., John’s metropolitan area in NL. Our methodology can be used to evaluate alternative plans to relax public health restrictions when vaccine coverage is high in regions that have implemented an ...