Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas

Retinoic acid (RA) plays important roles in various biological processes in animals. RA signaling is mediated by two types of nuclear receptors, namely retinoic acid receptor (RAR) and retinoid x receptor (RXR), which regulate gene expression by binding to retinoic acid response elements (RAREs) in...

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Published in:International Journal of Molecular Sciences
Main Authors: Jin, Qianqian, Huo, Chuncao, Yang, Wenhao, Jin, Kaidi, Cai, Shuai, Zheng, Yanxin, Huang, Baoyu, Wei, Lei, Zhang, Meiwei, Han, Yijing, Zhang, Xuekai, Liu, Yaqiong, Wang, Xiaotong
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Language:English
Published: MDPI 2022
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Online Access:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656583/
http://www.ncbi.nlm.nih.gov/pubmed/36361629
https://doi.org/10.3390/ijms232112840
id ftpubmed:oai:pubmedcentral.nih.gov:9656583
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spelling ftpubmed:oai:pubmedcentral.nih.gov:9656583 2023-05-15T15:58:48+02:00 Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas Jin, Qianqian Huo, Chuncao Yang, Wenhao Jin, Kaidi Cai, Shuai Zheng, Yanxin Huang, Baoyu Wei, Lei Zhang, Meiwei Han, Yijing Zhang, Xuekai Liu, Yaqiong Wang, Xiaotong 2022-10-25 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656583/ http://www.ncbi.nlm.nih.gov/pubmed/36361629 https://doi.org/10.3390/ijms232112840 en eng MDPI http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656583/ http://www.ncbi.nlm.nih.gov/pubmed/36361629 http://dx.doi.org/10.3390/ijms232112840 © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). CC-BY Int J Mol Sci Communication Text 2022 ftpubmed https://doi.org/10.3390/ijms232112840 2022-11-20T02:34:23Z Retinoic acid (RA) plays important roles in various biological processes in animals. RA signaling is mediated by two types of nuclear receptors, namely retinoic acid receptor (RAR) and retinoid x receptor (RXR), which regulate gene expression by binding to retinoic acid response elements (RAREs) in the promoters of target genes. Here, we explored the effect of all-trans retinoic acid (ATRA) on the Pacific oyster Crassostera gigas at the transcriptome level. A total of 586 differentially expressed genes (DEGs) were identified in C. gigas upon ATRA treatment, with 309 upregulated and 277 downregulated genes. Bioinformatic analysis revealed that ATRA affects the development, metabolism, reproduction, and immunity of C. gigas. Four tyrosinase genes, including Tyr-6 (LOC105331209), Tyr-9 (LOC105346503), Tyr-20 (LOC105330910), and Tyr-12 (LOC105320007), were upregulated by ATRA according to the transcriptome data and these results were verified by real-time quantitative polymerase chain reaction (RT-qPCR) analysis. In addition, increased expression of Tyr (a melanin-related TYR gene in C. gigas) and Tyr-2 were detected after ATRA treatment. The yeast one-hybrid assay revealed the DNA-binding activity of the RA receptors CgRAR and CgRXR, and the interaction of CgRAR with RARE present in the Tyr-2 promoter. These results provide evidence for the further studies on the role of ATRA and the mechanism of RA receptors in mollusks. Text Crassostrea gigas Pacific oyster PubMed Central (PMC) Pacific International Journal of Molecular Sciences 23 21 12840
institution Open Polar
collection PubMed Central (PMC)
op_collection_id ftpubmed
language English
topic Communication
spellingShingle Communication
Jin, Qianqian
Huo, Chuncao
Yang, Wenhao
Jin, Kaidi
Cai, Shuai
Zheng, Yanxin
Huang, Baoyu
Wei, Lei
Zhang, Meiwei
Han, Yijing
Zhang, Xuekai
Liu, Yaqiong
Wang, Xiaotong
Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
topic_facet Communication
description Retinoic acid (RA) plays important roles in various biological processes in animals. RA signaling is mediated by two types of nuclear receptors, namely retinoic acid receptor (RAR) and retinoid x receptor (RXR), which regulate gene expression by binding to retinoic acid response elements (RAREs) in the promoters of target genes. Here, we explored the effect of all-trans retinoic acid (ATRA) on the Pacific oyster Crassostera gigas at the transcriptome level. A total of 586 differentially expressed genes (DEGs) were identified in C. gigas upon ATRA treatment, with 309 upregulated and 277 downregulated genes. Bioinformatic analysis revealed that ATRA affects the development, metabolism, reproduction, and immunity of C. gigas. Four tyrosinase genes, including Tyr-6 (LOC105331209), Tyr-9 (LOC105346503), Tyr-20 (LOC105330910), and Tyr-12 (LOC105320007), were upregulated by ATRA according to the transcriptome data and these results were verified by real-time quantitative polymerase chain reaction (RT-qPCR) analysis. In addition, increased expression of Tyr (a melanin-related TYR gene in C. gigas) and Tyr-2 were detected after ATRA treatment. The yeast one-hybrid assay revealed the DNA-binding activity of the RA receptors CgRAR and CgRXR, and the interaction of CgRAR with RARE present in the Tyr-2 promoter. These results provide evidence for the further studies on the role of ATRA and the mechanism of RA receptors in mollusks.
format Text
author Jin, Qianqian
Huo, Chuncao
Yang, Wenhao
Jin, Kaidi
Cai, Shuai
Zheng, Yanxin
Huang, Baoyu
Wei, Lei
Zhang, Meiwei
Han, Yijing
Zhang, Xuekai
Liu, Yaqiong
Wang, Xiaotong
author_facet Jin, Qianqian
Huo, Chuncao
Yang, Wenhao
Jin, Kaidi
Cai, Shuai
Zheng, Yanxin
Huang, Baoyu
Wei, Lei
Zhang, Meiwei
Han, Yijing
Zhang, Xuekai
Liu, Yaqiong
Wang, Xiaotong
author_sort Jin, Qianqian
title Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
title_short Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
title_full Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
title_fullStr Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
title_full_unstemmed Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
title_sort regulation of tyrosinase gene expression by retinoic acid pathway in the pacific oyster crassostrea gigas
publisher MDPI
publishDate 2022
url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656583/
http://www.ncbi.nlm.nih.gov/pubmed/36361629
https://doi.org/10.3390/ijms232112840
geographic Pacific
geographic_facet Pacific
genre Crassostrea gigas
Pacific oyster
genre_facet Crassostrea gigas
Pacific oyster
op_source Int J Mol Sci
op_relation http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656583/
http://www.ncbi.nlm.nih.gov/pubmed/36361629
http://dx.doi.org/10.3390/ijms232112840
op_rights © 2022 by the authors.
https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
op_rightsnorm CC-BY
op_doi https://doi.org/10.3390/ijms232112840
container_title International Journal of Molecular Sciences
container_volume 23
container_issue 21
container_start_page 12840
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